
CODONML in paml version 4.10.10, 29 Jan 2026

----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
      TTC |       TCC |       TAC |       TGC
Leu L TTA |       TCA | *** * TAA | *** * TGA
      TTG |       TCG |       TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
      CTC |       CCC |       CAC |       CGC
      CTA |       CCA | Gln Q CAA |       CGA
      CTG |       CCG |       CAG |       CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
      ATC |       ACC |       AAC |       AGC
      ATA |       ACA | Lys K AAA | Arg R AGA
Met M ATG |       ACG |       AAG |       AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
      GTC |       GCC |       GAC |       GGC
      GTA |       GCA | Glu E GAA |       GGA
      GTG |       GCG |       GAG |       GGG
----------------------------------------------
Nice code, uuh?
ns = 30  	ls = 918
Reading sequences, sequential format..
Reading seq # 1: Antrozous_pallidus       
Reading seq # 2: Eptesicus_fuscus       
Reading seq # 3: Erinaceus_europaeus       
Reading seq # 4: Ictidomys_tridecemlineatus       
Reading seq # 5: Marmota_flaviventris       
Reading seq # 6: Marmota_marmota       
Reading seq # 7: Marmota_monax       
Reading seq # 8: Myotis_lucifugus       
Reading seq # 9: Rhinolophus_ferrumequinum       
Reading seq #10: Urocitellus_parryii       
Reading seq #11: Ursus_americanus       
Reading seq #12: Ursus_arctos       
Reading seq #13: Callorhinus_ursinus       
Reading seq #14: Heterocephalus_glaber       
Reading seq #15: Homo_sapiens       
Reading seq #16: Lemmus_lemmus       
Reading seq #17: Microtus_ochrogaster       
Reading seq #18: Mus_musculus       
Reading seq #19: Mustela_erminea       
Reading seq #20: Mustela_putorius_furo       
Reading seq #21: Myodes_glareolus       
Reading seq #22: Neovison_vison       
Reading seq #23: Ochotona_princeps       
Reading seq #24: Oryctolagus_cuniculus       
Reading seq #25: Phoca_vitulina       
Reading seq #26: Pteropus_vampyrus       
Reading seq #27: Rattus_norvegicus       
Reading seq #28: Sorex_araneus       
Reading seq #29: Talpa_europaea       
Reading seq #30: Talpa_occidentalis       
Sequences read..
Counting site patterns..  0:00

Compressing,    302 patterns at    306 /    306 sites (100.0%),  0:00

Collecting fpatt[] & pose[],    302 patterns at    306 /    306 sites (100.0%),  0:00
1 ambiguous codons are seen in the data:
 ---
Counting codons..
NG distances for seqs.:
   1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20  21  22  23  24  25  26  27  28  29  30

     3480 bytes for distance
   294752 bytes for conP
        0 bytes for fhK
  5000000 bytes for space

2 branch types are in tree. Stop if wrong.
Tree is 
(((((((Mus_musculus, Rattus_norvegicus), ((Myodes_glareolus, Microtus_ochrogaster), Lemmus_lemmus)), Heterocephalus_glaber), ((Marmota_flaviventris #1, (Marmota_marmota #1, Marmota_monax #1)), (Urocitellus_parryii #1, Ictidomys_tridecemlineatus #1))), (Oryctolagus_cuniculus, Ochotona_princeps)), Homo_sapiens), ((((Eptesicus_fuscus #1, Antrozous_pallidus #1, Myotis_lucifugus #1), (Pteropus_vampyrus, Rhinolophus_ferrumequinum #1)), (((Mustela_putorius_furo, Mustela_erminea), Neovison_vison), ((Ursus_arctos #1, Ursus_americanus #1), (Phoca_vitulina, Callorhinus_ursinus)))), ((Sorex_araneus, (Talpa_europaea, Talpa_occidentalis)), Erinaceus_europaeus #1)));

TREE #  1
(((((((18, 27), ((21, 17), 16)), 14), ((5, (6, 7)), (10, 4))), (24, 23)), 15), ((((2, 1, 8), (26, 9)), (((20, 19), 22), ((12, 11), (25, 13)))), ((28, (29, 30)), 3)));   MP score: -1
This is a rooted tree, without clock.  Check.

   1   40.166525
   2   36.547763
   3   35.951817
   4   35.873321
   5   35.848530
   6   35.848344
   7   35.848096
   8   35.263946
   9   35.187004
  10   35.168779
  11   35.165536
  12   35.165493
  13   35.165492
  4126528 bytes for conP, adjusted

1 node(s) used for scaling (Yang 2000 J Mol Evol 51:423-432):
 45

    0.053376    0.081007    0.086283    0.016045    0.147380    0.056779    0.070700    0.076422    0.090059    0.015173    0.099277    0.061264    0.061014    0.100139    0.132187    0.055432    0.030499    0.016597    0.016508    0.083424    0.076895    0.040039    0.088983    0.081087    0.090601    0.128581    0.116949    0.010767    0.076978    0.016941    0.089702    0.056901    0.100006    0.074664    0.065517    0.100625    0.132969    0.096953    0.113170    0.010441    0.068765    0.020917    0.029211    0.032809    0.081331    0.069298    0.063441    0.040716    0.057063    0.075150    0.147038    0.000000    0.162103    0.080771    0.057092    0.065346    0.170375    1.189149    0.920582    0.896187

ntime & nrate & np:    57     3    60

Bounds (np=60):
   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000100   0.000100   0.000100
  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000 999.000000 999.000000 999.000000

np =    60
lnL0 = -9550.523703

Iterating by ming2
Initial: fx=  9550.523703
x=  0.05338  0.08101  0.08628  0.01605  0.14738  0.05678  0.07070  0.07642  0.09006  0.01517  0.09928  0.06126  0.06101  0.10014  0.13219  0.05543  0.03050  0.01660  0.01651  0.08342  0.07690  0.04004  0.08898  0.08109  0.09060  0.12858  0.11695  0.01077  0.07698  0.01694  0.08970  0.05690  0.10001  0.07466  0.06552  0.10063  0.13297  0.09695  0.11317  0.01044  0.06877  0.02092  0.02921  0.03281  0.08133  0.06930  0.06344  0.04072  0.05706  0.07515  0.14704  0.00000  0.16210  0.08077  0.05709  0.06535  0.17037  1.18915  0.92058  0.89619

  1 h-m-p  0.0000 0.0001 3275.2939 ++     9345.240588  m 0.0001    65 | 1/60
  2 h-m-p  0.0000 0.0000 1762.0327 ++     9333.550566  m 0.0000   128 | 2/60
  3 h-m-p  0.0000 0.0001 1909.0334 ++     9185.178080  m 0.0001   191 | 3/60
  4 h-m-p  0.0000 0.0001 2491.4729 ++     9092.920728  m 0.0001   254 | 3/60
  5 h-m-p  0.0000 0.0000 45263.0182 +YCYYYCYCCC  9055.889338  9 0.0000   331 | 3/60
  6 h-m-p  0.0000 0.0000 22807.4271 ++     8918.335953  m 0.0000   394 | 3/60
  7 h-m-p  0.0000 0.0000 83335.2169 +CYCYCYC  8842.775908  6 0.0000   467 | 3/60
  8 h-m-p  0.0000 0.0000 145248.7022 +CYCYCCC  8795.801042  6 0.0000   541 | 3/60
  9 h-m-p  0.0000 0.0000 690608.0878 +YYCCC  8763.211409  4 0.0000   611 | 3/60
 10 h-m-p  0.0000 0.0000 12572.6207 CCCC   8753.356092  3 0.0000   680 | 3/60
 11 h-m-p  0.0000 0.0001 945.1657 YCCCC  8749.797576  4 0.0000   750 | 3/60
 12 h-m-p  0.0000 0.0009 384.1893 ++YYCC  8720.243881  3 0.0007   819 | 3/60
 13 h-m-p  0.0001 0.0007 511.8261 +YCC   8703.109923  2 0.0004   886 | 3/60
 14 h-m-p  0.0001 0.0004 461.4163 +CYCC  8689.229497  3 0.0003   955 | 3/60
 15 h-m-p  0.0000 0.0001 1016.8201 ++     8682.967037  m 0.0001  1018 | 4/60
 16 h-m-p  0.0000 0.0003 1036.3704 +CYCCC  8661.918732  4 0.0002  1090 | 4/60
 17 h-m-p  0.0000 0.0002 1379.5751 CYCCC  8655.749196  4 0.0001  1160 | 4/60
 18 h-m-p  0.0001 0.0006 174.8651 CCCC   8654.086691  3 0.0002  1229 | 4/60
 19 h-m-p  0.0001 0.0007 149.8931 YCCC   8652.414788  3 0.0003  1297 | 4/60
 20 h-m-p  0.0002 0.0013 216.7637 YCCC   8649.898680  3 0.0004  1365 | 4/60
 21 h-m-p  0.0002 0.0012 331.4559 CC     8647.078277  1 0.0003  1430 | 4/60
 22 h-m-p  0.0001 0.0007 225.9355 CCCC   8645.944117  3 0.0002  1499 | 4/60
 23 h-m-p  0.0006 0.0033  66.0859 CCC    8645.144142  2 0.0005  1566 | 4/60
 24 h-m-p  0.0003 0.0017  80.1715 CC     8644.628394  1 0.0003  1631 | 4/60
 25 h-m-p  0.0005 0.0047  47.8042 CCC    8643.910573  2 0.0006  1698 | 4/60
 26 h-m-p  0.0004 0.0019  35.9439 CCC    8643.510755  2 0.0004  1765 | 4/60
 27 h-m-p  0.0003 0.0018  49.1497 CCC    8642.955192  2 0.0003  1832 | 3/60
 28 h-m-p  0.0004 0.0042  38.7799 CCC    8642.124685  2 0.0006  1899 | 3/60
 29 h-m-p  0.0003 0.0014  42.2615 CCC    8641.769468  2 0.0003  1966 | 3/60
 30 h-m-p  0.0003 0.0036  38.5094 CC     8641.305633  1 0.0005  2031 | 3/60
 31 h-m-p  0.0004 0.0020  33.4782 CCC    8640.852364  2 0.0005  2098 | 3/60
 32 h-m-p  0.0002 0.0011  51.6246 +YC    8639.931913  1 0.0006  2163 | 3/60
 33 h-m-p  0.0001 0.0004  47.8280 ++     8638.383338  m 0.0004  2226 | 3/60
 34 h-m-p  0.0000 0.0000 109.3282 
h-m-p:      2.06678458e-21      1.03339229e-20      1.09328229e+02  8638.383338
..  | 3/60
 35 h-m-p  0.0000 0.0001 2163.3336 +YYCCC  8607.835955  4 0.0001  2356 | 3/60
 36 h-m-p  0.0000 0.0001 815.3251 ++     8566.743409  m 0.0001  2419 | 3/60
 37 h-m-p  0.0000 0.0000 10241.7441 ++     8515.083276  m 0.0000  2482 | 3/60
 38 h-m-p  0.0000 0.0000 2235.9295 +CYYCYCYC  8501.381710  7 0.0000  2557 | 3/60
 39 h-m-p  0.0000 0.0000 1618.0361 ++     8475.296079  m 0.0000  2620 | 4/60
 40 h-m-p  0.0000 0.0002 1053.0343 +YYCYYC  8439.664727  5 0.0002  2691 | 4/60
 41 h-m-p  0.0000 0.0000 641.2028 +YYYCCC  8436.934704  5 0.0000  2762 | 4/60
 42 h-m-p  0.0001 0.0003 212.9261 YCYCCC  8433.802686  5 0.0002  2833 | 4/60
 43 h-m-p  0.0000 0.0001 626.7171 CYC    8432.560097  2 0.0000  2899 | 4/60
 44 h-m-p  0.0001 0.0008 263.9256 YCCC   8430.770221  3 0.0001  2967 | 4/60
 45 h-m-p  0.0002 0.0008 156.1011 YCCC   8429.224472  3 0.0003  3035 | 4/60
 46 h-m-p  0.0003 0.0018 126.7481 YCC    8428.367650  2 0.0002  3101 | 4/60
 47 h-m-p  0.0002 0.0010 111.3086 CYC    8427.912280  2 0.0002  3167 | 4/60
 48 h-m-p  0.0003 0.0025  63.7340 CC     8427.575684  1 0.0003  3232 | 4/60
 49 h-m-p  0.0005 0.0032  39.2093 YCC    8427.429440  2 0.0003  3298 | 4/60
 50 h-m-p  0.0003 0.0061  47.4908 CC     8427.295130  1 0.0003  3363 | 4/60
 51 h-m-p  0.0006 0.0074  20.8485 CC     8427.196160  1 0.0005  3428 | 3/60
 52 h-m-p  0.0003 0.0073  40.5581 YC     8427.035126  1 0.0004  3492 | 3/60
 53 h-m-p  0.0004 0.0032  47.5335 CC     8426.811970  1 0.0005  3557 | 3/60
 54 h-m-p  0.0003 0.0025  84.4654 CYC    8426.574716  2 0.0003  3623 | 3/60
 55 h-m-p  0.0004 0.0023  67.2847 CCC    8426.272391  2 0.0004  3690 | 3/60
 56 h-m-p  0.0001 0.0007 111.0322 +YC    8425.832639  1 0.0004  3755 | 3/60
 57 h-m-p  0.0001 0.0005 100.4521 ++     8425.231405  m 0.0005  3818 | 4/60
 58 h-m-p  0.0005 0.0024 107.1395 YCC    8424.646630  2 0.0004  3884 | 4/60
 59 h-m-p  0.0005 0.0052  77.4748 CCC    8424.188914  2 0.0004  3951 | 4/60
 60 h-m-p  0.0003 0.0028 126.0165 +YCC   8422.890392  2 0.0007  4018 | 4/60
 61 h-m-p  0.0004 0.0019 137.8885 CCCC   8421.861757  3 0.0005  4087 | 4/60
 62 h-m-p  0.0003 0.0015 128.8018 CCC    8421.123767  2 0.0004  4154 | 3/60
 63 h-m-p  0.0006 0.0049  73.2222 YCCC   8420.720576  3 0.0003  4222 | 3/60
 64 h-m-p  0.0004 0.0025  52.9414 CCC    8420.185067  2 0.0005  4289 | 3/60
 65 h-m-p  0.0004 0.0019  35.0778 YC     8419.512416  1 0.0007  4353 | 3/60
 66 h-m-p  0.0001 0.0006  69.1620 ++     8418.001799  m 0.0006  4416 | 3/60
 67 h-m-p  0.0003 0.0014 131.6947 YCCC   8415.189939  3 0.0006  4484 | 3/60
 68 h-m-p  0.0001 0.0004 126.3347 ++     8412.227951  m 0.0004  4547 | 4/60
 69 h-m-p  0.0001 0.0004 240.7677 +CCC   8409.889342  2 0.0003  4615 | 4/60
 70 h-m-p  0.0001 0.0004  91.8508 ++     8408.510504  m 0.0004  4678 | 4/60
 71 h-m-p  0.0000 0.0000  80.4943 
h-m-p:      1.92748113e-21      9.63740564e-21      8.04942842e+01  8408.510504
..  | 4/60
 72 h-m-p  0.0000 0.0002 5913.6916 CYYCCCC  8404.953093  6 0.0000  4811 | 4/60
 73 h-m-p  0.0000 0.0002 318.0996 +YCYCCC  8396.320108  5 0.0001  4883 | 4/60
 74 h-m-p  0.0000 0.0001 507.3946 YCYCCC  8393.561747  5 0.0000  4954 | 4/60
 75 h-m-p  0.0000 0.0000 512.9153 CCCC   8393.031095  3 0.0000  5023 | 4/60
 76 h-m-p  0.0000 0.0001 227.5441 CCCC   8392.675295  3 0.0000  5092 | 4/60
 77 h-m-p  0.0001 0.0010  74.1793 +YYYC  8392.061066  3 0.0003  5159 | 3/60
 78 h-m-p  0.0001 0.0006 321.0344 CYC    8391.558816  2 0.0001  5225 | 3/60
 79 h-m-p  0.0001 0.0003 307.2690 CCC    8391.000141  2 0.0001  5292 | 3/60
 80 h-m-p  0.0002 0.0012 122.0190 CYC    8390.571031  2 0.0002  5358 | 3/60
 81 h-m-p  0.0002 0.0008  99.6469 YYC    8390.341540  2 0.0001  5423 | 3/60
 82 h-m-p  0.0001 0.0010  95.6978 CC     8390.178611  1 0.0001  5488 | 3/60
 83 h-m-p  0.0003 0.0027  46.1901 CC     8390.037781  1 0.0003  5553 | 3/60
 84 h-m-p  0.0003 0.0021  42.2359 CCC    8389.942823  2 0.0003  5620 | 3/60
 85 h-m-p  0.0002 0.0010  59.4909 YC     8389.799068  1 0.0003  5684 | 3/60
 86 h-m-p  0.0001 0.0007  70.9072 YC     8389.659823  1 0.0003  5748 | 3/60
 87 h-m-p  0.0001 0.0003  79.7702 +YC    8389.557014  1 0.0002  5813 | 3/60
 88 h-m-p  0.0000 0.0001  55.9759 ++     8389.503101  m 0.0001  5876 | 3/60
 89 h-m-p  0.0000 0.0000  72.3519 
h-m-p:      7.93072194e-22      3.96536097e-21      7.23519062e+01  8389.503101
..  | 3/60
 90 h-m-p  0.0000 0.0003 107.5659 +CC    8389.180419  1 0.0001  6002 | 3/60
 91 h-m-p  0.0000 0.0001  56.0506 CCC    8389.156746  2 0.0000  6069 | 3/60
 92 h-m-p  0.0000 0.0000  33.2994 ++     8389.139322  m 0.0000  6132 | 4/60
 93 h-m-p  0.0000 0.0005  44.0625 YC     8389.119450  1 0.0000  6196 | 4/60
 94 h-m-p  0.0001 0.0034  21.8425 CC     8389.100673  1 0.0001  6261 | 4/60
 95 h-m-p  0.0001 0.0014  33.2926 CC     8389.082025  1 0.0001  6326 | 4/60
 96 h-m-p  0.0001 0.0048  40.9354 CC     8389.067849  1 0.0001  6391 | 4/60
 97 h-m-p  0.0001 0.0013  33.5966 CC     8389.057631  1 0.0001  6456 | 4/60
 98 h-m-p  0.0001 0.0023  27.1617 C      8389.048125  0 0.0001  6519 | 4/60
 99 h-m-p  0.0001 0.0116  23.6097 YC     8389.032770  1 0.0002  6583 | 4/60
100 h-m-p  0.0001 0.0034  39.8366 CC     8389.016107  1 0.0002  6648 | 4/60
101 h-m-p  0.0003 0.0058  21.4409 CC     8389.004016  1 0.0002  6713 | 4/60
102 h-m-p  0.0002 0.0060  33.1556 YC     8388.976187  1 0.0004  6777 | 4/60
103 h-m-p  0.0002 0.0061  52.3569 YC     8388.958897  1 0.0002  6841 | 4/60
104 h-m-p  0.0002 0.0035  34.0065 CC     8388.944844  1 0.0002  6906 | 4/60
105 h-m-p  0.0002 0.0086  32.7600 CC     8388.930331  1 0.0002  6971 | 4/60
106 h-m-p  0.0002 0.0083  39.7080 CC     8388.914352  1 0.0002  7036 | 4/60
107 h-m-p  0.0004 0.0131  24.0456 CC     8388.901551  1 0.0003  7101 | 4/60
108 h-m-p  0.0004 0.0066  20.7581 YC     8388.893693  1 0.0002  7165 | 4/60
109 h-m-p  0.0004 0.0159  11.4922 YC     8388.889620  1 0.0003  7229 | 4/60
110 h-m-p  0.0004 0.0742   7.2145 CC     8388.885032  1 0.0006  7294 | 4/60
111 h-m-p  0.0006 0.0258   7.3740 C      8388.883817  0 0.0002  7357 | 4/60
112 h-m-p  0.0003 0.0332   3.7128 Y      8388.883092  0 0.0003  7420 | 4/60
113 h-m-p  0.0004 0.0760   2.7224 C      8388.882486  0 0.0004  7483 | 4/60
114 h-m-p  0.0002 0.0554   5.3171 CC     8388.881622  1 0.0003  7548 | 4/60
115 h-m-p  0.0005 0.0634   3.5902 YC     8388.881150  1 0.0003  7612 | 4/60
116 h-m-p  0.0004 0.0732   2.7363 C      8388.880826  0 0.0003  7675 | 4/60
117 h-m-p  0.0009 0.1108   0.9638 Y      8388.880725  0 0.0004  7738 | 4/60
118 h-m-p  0.0003 0.0788   1.3509 Y      8388.880666  0 0.0002  7857 | 4/60
119 h-m-p  0.0005 0.2746   0.4866 Y      8388.880638  0 0.0004  7920 | 4/60
120 h-m-p  0.0028 1.3763   0.2729 C      8388.880608  0 0.0010  8039 | 3/60
121 h-m-p  0.0011 0.5304   0.2961 Y      8388.880585  0 0.0007  8158 | 3/60
122 h-m-p  0.0004 0.0038   0.5563 C      8388.880553  0 0.0005  8278 | 3/60
123 h-m-p  0.0001 0.0004   0.5149 ++     8388.880533  m 0.0004  8398 | 4/60
124 h-m-p  0.0009 0.4324   0.4836 Y      8388.880496  0 0.0006  8518 | 4/60
125 h-m-p  0.0015 0.7705   0.2313 C      8388.880409  0 0.0020  8637 | 3/60
126 h-m-p  0.0006 0.2144   0.7346 C      8388.880292  0 0.0007  8756 | 3/60
127 h-m-p  0.0002 0.0012   0.3540 ++     8388.880107  m 0.0012  8876 | 4/60
128 h-m-p  0.0007 0.2349   0.5835 YC     8388.879499  1 0.0018  8997 | 3/60
129 h-m-p  0.0017 0.0875   0.6018 C      8388.878547  0 0.0016  9116 | 3/60
130 h-m-p  0.0001 0.0007   1.3563 ++     8388.877132  m 0.0007  9236 | 3/60
131 h-m-p  0.0008 0.2194   1.1564 C      8388.876179  0 0.0010  9299 | 3/60
132 h-m-p  0.0001 0.0006   1.0954 ++     8388.875845  m 0.0006  9362 | 3/60
133 h-m-p  0.0005 0.2524   1.2698 C      8388.875525  0 0.0006  9425 | 3/60
134 h-m-p  0.0023 1.1630   0.3565 Y      8388.875469  0 0.0010  9488 | 3/60
135 h-m-p  0.0004 0.0018   0.4732 C      8388.875447  0 0.0004  9608 | 3/60
136 h-m-p  0.0025 1.2416   0.2324 C      8388.875434  0 0.0008  9728 | 3/60
137 h-m-p  0.0022 0.0441   0.0809 C      8388.875431  0 0.0008  9848 | 3/60
138 h-m-p  0.0022 0.2431   0.0301 C      8388.875430  0 0.0020  9968 | 3/60
139 h-m-p  0.0144 7.1860   0.0187 C      8388.875428  0 0.0029 10088 | 3/60
140 h-m-p  0.0027 0.0894   0.0204 Y      8388.875417  0 0.0063 10208 | 3/60
141 h-m-p  0.0016 0.0244   0.0823 C      8388.875394  0 0.0021 10328 | 3/60
142 h-m-p  0.0024 0.0119   0.0640 +Y     8388.875239  0 0.0075 10449 | 3/60
143 h-m-p  0.0003 0.0013   0.3130 +C     8388.875178  0 0.0009 10570 | 3/60
144 h-m-p  0.0003 0.0013   0.1759 +C     8388.875164  0 0.0009 10691 | 3/60
145 h-m-p  0.0034 0.1336   0.0477 C      8388.875163  0 0.0011 10811 | 3/60
146 h-m-p  0.0160 8.0000   0.0348 -C     8388.875162  0 0.0009 10932 | 3/60
147 h-m-p  0.0015 0.0076   0.0077 Y      8388.875162  0 0.0003 11052 | 3/60
148 h-m-p  0.0028 0.0438   0.0008 Y      8388.875162  0 0.0014 11172 | 3/60
149 h-m-p  0.0002 0.0031   0.0053 +C     8388.875162  0 0.0010 11293 | 3/60
150 h-m-p  0.0001 0.0005   0.0083 ++     8388.875162  m 0.0005 11413 | 4/60
151 h-m-p  0.0160 8.0000   0.0103 -Y     8388.875162  0 0.0008 11534 | 4/60
152 h-m-p  0.2484 8.0000   0.0000 Y      8388.875162  0 0.5388 11653 | 4/60
153 h-m-p  1.5759 8.0000   0.0000 C      8388.875162  0 0.5997 11772 | 4/60
154 h-m-p  1.6000 8.0000   0.0000 C      8388.875162  0 0.4166 11891 | 4/60
155 h-m-p  0.5030 8.0000   0.0000 C      8388.875162  0 0.1707 12010 | 4/60
156 h-m-p  0.1857 8.0000   0.0000 Y      8388.875162  0 0.1383 12129 | 4/60
157 h-m-p  0.1577 8.0000   0.0000 C      8388.875162  0 0.0494 12248 | 4/60
158 h-m-p  0.0519 8.0000   0.0000 -----------Y  8388.875162  0 0.0000 12378
Out..
lnL  = -8388.875162
12379 lfun, 24758 eigenQcodon, 705603 P(t)

Time used: 12:49
