     25    918

Erinaceus_europaeus             ATG GGG GGC ACC ACC GCC TCA GAT GGG ACC CCC ACC ATG TCT GTC AGG ATC TTC TCT GCA GGG GTG GCC GCC TGC CTG GCT GAC ATC ATC ACC TTC CCG CTG GAC ACA GCC AAA GTG CGG CTG CAG ATC CAG GGC GAA AGC CCG GTG TCC AGT GGC ATC CGG TAC AAG GGC GTC CTG GGC ACC ATC AGC ACC GTG GCC CGG ACG GAA GGG CCT CTG AAG CTG TAC GGG GGG CTG CCC GCC GGG CTG CAG AGA CAG ATC AGC TTT GCC TCG CTG CGC ATT GGG CTG TAC GAC TCG GTG CAG GAG TTC TTC TCT --- GGC AAA GAC AAA GCT ACT CTG GGG AAC AAG ATC TCG GCT GGG CTG ACG ACT GGG GGA GTG GCC GTG TTC ATC GGG CAG CCC ACT GAG GTG GTG AAG GTC CGG CTG CAG GCC CAG AGC CAC CTG CAC GGC CTC AAG CCT CGC TAC ACA GGG ACC TAC AAT GCC TAC TGG GTG GTG GCC AAC ACT GAG GGA ATC CTG GGT CTC TGG AAA GGG ACC AGC CTC AGC CTG ACA CGC AAC GTC ATC ATC AAC TGC ACA GAG CTG GTG GTA TAC GAC CTG ATG AAG GAG GCG CTG GTG AGG AGG AAG GTG CTC GCA GAT GAC GTC CCC TGC CAC TTC GTG TCG GCC CTG GTG GCC GGG TTT TGC ACG ACG GCT CTG GCT TCT CCA GTG GAT GTG GTG AAA AGC AGG ATC ATT AAT TCC CCG CCG GGC TTC TAC CCT CAT GTG CAC GAC TGC GCC TTG GCG ATG CTC ACC AAG GAG GGG CCC ACG GCC TTC TTT AAA GGG TTT GTG CCC TCC TTC CTG CGG CTT GGC TCC TGG ACC GTC ATC ATG TTC ATG ACC TTT GAG CAG CTC AAG CGG GAA CTG ATG AAG TCC CGG CAG ACG GTG GAC TGT ACC ACA 
Ictidomys_tridecemlineatus      ATG GTG AGC CCC ACG GCC TCC GAC GTG CAC CCG ACC ATG GGC ATC AAG ATC GTC TCA GCC GGA GTG TCA GCC TGC TTG GCG GAT GTG ATC ACC TTC CCG CTG GAC ACC GCC AAA GTC CGG CTA CAG ATC CAA GGC GAA TTC CCT GTC TCC AGC GGT ATT ACG TAT AAA GGA GTC CTG GGA ACA ATC ACC ACC CTG GCC AAA ACT GAA GGG CCC ATG AAA CTG TAC AGC GGG CTG CCC GCG GGA CTG CAA AGG CAA ATC AGC TTC GCC TCT CTT AGG ATC GGC CTC TAT GAT TCT GTC CAG GAG TTC TTC ACC TCA GGG GAT GAA ACA CCC AGC TTG GGA AGC AAA ATC TCA GCC GGA CTC ACA ACT GGA GGA GTG GCA GTG TTC ATT GGG CAG CCC ACC GAG GTG GTG AAG GTC AGG CTC CAA GCA CAG AGC CAC CTA CAC GGT CTC AAA CCT CGC TAC ACC GGG ACC TAC AAC GCG TAC AGA ATT ATA GCA ACA ACA GAG AGC TTC AGG AGT CTT TGG AAA GGG ACT ACT CCT AAT CTG TTG AGA AAT GTC ATC ATC AAT TGC ACA GAG TTG GTA ACA TAT GAC CTG ATG AAG GGG GCT CTT GTG AGA AAC AAA ATC CTA GCA GAT GAT GTC CCC TGC CAC CTG CTG TCC GCT TTC GTC GCT GGA TTT TGC ACC ACA CTC CTG TCC TCG CCT GCT GAT GTA GTG AAG ACC AGA TTT ATT AAC TCT CCG CCA GGG CAG TAT ACC AGC GTG CCC AGA TGT GCA ATG ACA ATG CTC CAC CAG GAA GGG CCG TCG GCA TTT TTC AAA GGA TTT CTA CCT TCC TTC CTG CGA CTG GCA TCC TGG AAC CTC ATT ATG TTC GTG AGC TTT GAA CAG CTG AAA CGA GAA TTG ATG AAG TCC AGG CAG ACA GTG GAC TGC GCC ACA 
Marmota_flaviventris            ATG GTG AGC CCC ACA GCC TCC GAC GTG CAC CCG ACC ATG GGC ATC AAG ATC GTC TCA GCC GGA GTG TCA GCC TGC TTG GCG GAT GTG ATC ACC TTC CCG CTG GAC ACC GCC AAA GTC CGG CTA CAG ATC CAA GGC GAA TTC CCA GTC TCC AGT GGT ATT AAG TAT AAA GGT GTC CTG GGA ACA ATC ACC ACC CTG GCA AAA ACC GAA GGG CCC ATG AAA CTG TAC AGT GGG TTG CCT GCG GGA TTG CAA AGG CAA ATA AGC TTC GCC TCT CTT AGG ATC GGC CTC TAT GAT TCT GTC CAG GAG TTC TTC ACC TCA GGG AAT GAA ACA CCC AGT TTG GGA AGC AAA ATC TCA GCC GGA CTC ACA ACT GGA GGA GTG GCA GTG TTC ATT GGG CAG CCC ACC GAG GTC GTG AAG GTC AGG CTC CAA GCA CAG AGC CAC CTA CAC GGG CTC AAA CCT CGC TAC ACT GGG ACC TAC AAT GCG TAC AGA ATT ATA GCA ACA ACA GAG AGC TTC AGG AGT CTT TGG AAA GGG ACT ACT CCT AAT CTG TTG AGA AAT GTC ATC ATC AAT TGC ACA GAG TTG GTA ACA TAT GAC CTG ATG AAG GGG GCT CTT GTG AGA AAC AAA ATC CTA GCA GAT GAT GTC CCC TGC CAC CTG CTG TCC GCT TTC GTC GCT GGA TTT TGC ACC ACA CTT CTG TCC TCG CCG GCT GAT GTG GTG AAG ACC AGA TTT ATT AAC TCT CCG CCA GGG CAG TAT ACC AGC GTG CCC AGA TGT GCA ATG ACA ATG CTC TAC CAG GAA GGG CCG TCG GCG TTT TTC AAA GGA TTT GTA CCT TCC TTC CTG CGA CTG GCA TCC TGG AAC GTC ATT ATG TTC GTG AGC TTT GAA CAG CTG AAA CGA GAA TTG ATG AAG TCC AGG CAG ACA GTG GAC TGC GCC ACG 
Marmota_marmota                 ATG GTG AGC CCC ACA GCC TCC GAC GTG CAC CCG ACC ATG GGC ATC AAG ATC GTC TCA GCC GGA GTG TCA GCC TGC TTG GCG GAT GTG ATC ACC TTC CCG CTG GAC ACC GCC AAA GTC CGG CTA CAG ATC CAA GGC GAA TTC CCA GTC TCC AGT GGT ATT AAG TAT AAA GGT GTC CTG GGA ACA ATC ACC ACC CTG GCA AAA ACC GAA GGG CCC ATG AAA CTG TAC AGT GGG TTG CCT GCG GGA TTG CAA AGG CAA ATA AGC TTC GCC TCT CTT AGG ATC GGC CTC TAT GAT TCT GTC CAG GAG TTC TTC ACC TCA GGG AAT GAA ACA CCC AGT TTG GGA AGC AAA ATC TCA GCC GGA CTC ACA ACT GGA GGA GTG GCA GTG TTC ATT GGG CAG CCC ACC GAG GTC GTG AAG GTC AGG CTC CAA GCA CAG AGC CAC CTA CAC GGG CTC AAA CCT CGC TAC ACT GGG ACC TAC AAC GCG TAC AGA ATT ATA GCA ACA ACA GAG AGC TTC AGG AGT CTT TGG AAA GGG ACT ACT CCT AAT CTG TTG AGA AAT GTC ATC ATC AAT TGC ACA GAG TTG GTA ACA TAT GAC CTG ATG AAG GGG GCT CTT GTG AGA AAC AAA ATC CTA GCA GAT GAT GTC CCC TGC CAC CTG CTG TCC GCT TTC GTC GCT GGA TTT TGC ACC ACA CTT CTG TCC TCG CCG GCT GAT GTG GTG AAG ACC AGA TTT ATT AAC TCT CCG CCA GGG CAG TAT ACC AGC GTG CCC AGA TGT GCA ATG ACA ATG CTC CAC CAG GAA GGG CCG TCG GCG TTT TTC AAA GGA TTT GTA CCT TCC TTC CTG CGA CTG GCA TCC TGG AAC GTC ATT ATG TTC GTG AGC TTT GAA CAG CTG AAA CGA GAA TTG ATG AAG TCC AGG CAG ACA GTG GAC TGC GCC ACG 
Marmota_monax                   ATG GTG AGC CCC ACA GCC TCC GAC GTG CAC CCG ACC ATG GGC ATC AAG ATC GTC TCA GCC GGA GTG TCA GCC TGC TTG GCG GAT GTG ATC ACC TTC CCT CTG GAC ACC GCC AAA GTC CGG CTA CAG ATC CAA GGC GAA TTC CCA GTC TCC AGT GGT ATT AAG TAT AAA GGT GTC CTG GGA ACA ATC ACC ACC CTG GCA AAA ACC GAA GGG CCC ATG AAA CTG TAC AGT GGG TTG CCT GCG GGA TTG CAA AGG CAA ATA AGC TTC GCC TCT CTT AGG ATC GGC CTC TAT GAT TCT GTC CAG GAG TTC TTC ACC TCA GGG AAT GAA ACA CCC AGT TTG GGA AGC AAA ATC TCA GCC GGA CTT ACA ACT GGA GGA GTG GCA GTG TTC ATT GGG CAG CCC ACC GAG GTC GTG AAG GTC AGG CTC CAA GCA CAG AGC CAC CTA CAT GGG CTC AAA CCT CGC TAC ACT GGG ACC TAC AAC GCG TAC AGA ATT ATA GCA ACA ACA GAG AGC TTC AGG AGT CTT TGG AAA GGG ACT ACT CCT AAT CTG TTG AGA AAT GTC ATC ATC AAT TGC ACA GAG TTG GTA ACA TAT GAC CTG ATG AAG GGG GCT CTT GTG AGA AAC AAA ATC CTA GCA GAT GAT GTC CCC TGC CAC CTG CTG TCT GCT TTC GTC GCT GGA TTT TGC ACC ACA CTT CTG TCC TCG CCG GCT GAT GTG GTG AAG ACC AGA TTT ATT AAC TCT CCG CCA GGG CAG TAT ACC AGC GTG CCC AGA TGT GCA ATG ACA ATG CTC CAC CAG GAA GGG CCG TCG GCG TTT TTC AAA GGA TTT GTA CCT TCC TTC CTG CGA CTG GCA TCC TGG AAC GTC ATT ATG TTC GTG AGC TTT GAA CAG CTG AAA CGA GAA TTG ATG AAG TCC AGG CAG ACA GTG GAC TGC GCC ACG 
Urocitellus_parryii             ATG GTG AGC CCC ACA GCC TCC GAC GTG CAC CCG ACC ATG GCC ATC AAG ATC GTC TCA GCC GGA GTG TCA GCC TGC TTG GCG GAT GTG ATC ACC TTC CCG CTG GAC ACC GCC AAA GTC CGG CTA CAG ATC CAA GGC GAA TTC CCA GTC TCC AGC GGT ATT ACG TAT AAA GGT GTC CTG GGA ACA ATC ACC ACC CTA GCA AAA ACC GAA GGG CCC ATG AAA CTG TAC AGC GGG TTG CCT GCG GGA TTG CAA AGG CAA ATA AGC TTC GCC TCT CTT AGG ATC GGC CTC TAT GAT TCT GTC CAG GAG TAC TTC ACC TCA GGG AAT GAA ACA CCC AGT TTG GGA AGC AAA ATC TCA GCC GGA CTC ACA ACT GGA GGA GTG GCA GTG TTC ATT GGG CAG CCC ACC GAG GTG GTG AAG GTC AGG CTC CAA GCA CAG AGC CAC CTA CAT GGT CTC AAA CCT CGC TAC ACC GGG ACC TAC AAC GCG TAC AGA ATT ATA GTA ACA ACA GAG AGC TTC AGG AGT CTT TGG AAA GGG ACT ACT CCT AAT CTG TTG AGA AAC GTC ATC ATC AAT TGC ACA GAG TTG GTA ACA TAT GAC CTG ATG AAG GGG GCT CTT GTG AGA AAC AAA ATC CTA GCA GAT GAT GTC CCC TGC CAC CTG CTG TCC GCT TTC GTC GCT GGA TTT TGC ACC ACA CTC CTG TCC TCG CCT GCT GAT GTA GTG AAG ACC AGA TTT ATT AAC TCT CCG CCA GGG CAG TAT ACC AGC GTG CCC AGA TGT GCA ATG GCA ATG CTC CAC CAG GAA GGG CCG TCG GCA TTT TTC AAA GGA TTT CTA CCT TCC TTC CTG CGA CTG GCA TCC TGG AAC CTC ATT ATG TTC GTG AGC TTT GAA CAG CTG AAA CGA GAA TTG ATG AAG TCC AGG CAG ACA GTG GAC TGC GCC ACA 
Ursus_americanus                ATG GTG GGC CCG ACA GCC TCC GAC GTG CGC CCG ACG ATG ACG GTC AAG ATC TTC TCA GCC GGC GTG GCG GCC TGT GCG GCG GAT GTG ATC ACC TTC CCG CTG GAC ACC GCC AAA GTC CGG CTC CAG ATT CAA GGT GAA TGC CAG ACC TCC AAA GCC ATT AGG TAT AAA GGT GTC CTG GGA ACA ATC ACC ACT CTG GCA AAA ACA GAA GGA CCA ATG AAA CTC TAT AGT GGA CTG CCT GCT GGT CTC CAG AGA CAA ATA AGC TTT GCC TCT CTT AGG ATT GGC CTC TAT GAC ACC GTG CAG GAG TTC TTC AGC ACA GGG AAA GAA ACA GCT AGT TTA GGA AGC AAG ATC GCA GCT GGT CTG ACG ACT GGA GGA GTG GCG GTG CTC ATC GGG CAA CCC ACG GAG GTC GTG AAG GTC CGA CTT CAA GCG CAG AGT CAT CTG CAC GGC CTC AAA CCT CGC TAC ACC GGG ACT TAC CAC GCT TAC AGG ATC ATA GCA ACG ACC GAA GGC CTG ACA GGC CTT TGG AAG GGG ACT ACT CCC AAT CTG ACA AGA AAT GTC ATC ATC AAT TGT ACA GAG CTA GTC ACC TAT GAC CTA ATG AAG GCG GCC CTT GTG AAA AAC AAA CTC CTA GCA GAC GAC TTA CCC TGC CAC TTC GTG TCA GCT CTC AGT GCC GGA TTT TGC ACA ACA GTC CTG TCC TCG CCA GTG GAT GTG GTA AAA ACC CGA TTT GTT AAT TCT CCC CCA GGA CAG TAC ACG AGT GTG CCC AAC TGC GCC ATG ACA ATG CTC ACT AAG GAA GGA CCG TTG GCT TTT TTC AAA GGA TTT GTA CCT TCC TTC TTG CGA CTC GGA TCC TGG AAC GTC ATT ATG TTT GTG TGC TTC GAA CAG CTG AAG CGA GAA CTG ATG AAG TCA GGG CCG ACC GTG GAC TGT GCC ACA 
Ursus_arctos                    ATG GTG GGC CCG ACA GCC TCC GAC GTG CGC CCG ACG ATG ACG GTC AAG ATC TTC TCA GCC GGC GTG GCG GCC TGT GCG GCG GAT GTG ATC ACC TTC CCG CTG GAC ACC GCC AAA GTC CGG CTC CAG ATT CAA GGT GAA TGC CAG ACC TCC AAA GCC ATT AGG TAT AAA GGT GTC CTG GGA ACA ATC ACC ACT CTG GCA AAA ACA GAA GGA CCA ATG AAA CTC TAT AGT GGA CTG CCT GCT GGT CTC CAG AGA CAA ATA AGC TTT GCC TCT CTT AGG ATT GGC CTC TAT GAC ACC GTG CAG GAG TTC TTC AGC ACA GGG AAA GAA ACA GCT AGT TTA GGA AGC AAG ATC GCA GCT GGT CTG ACG ACT GGA GGA GTG GCG GTG TTC ATC GGG CAA CCC ACG GAG GTC GTG AAG GTC CGA CTT CAA GCG CAG AGT CAT CTG CAC GGC CTC AAA CCT CGC TAC ACC GGG ACT TAC CAC GCT TAC AGG ATC ATA GCA ACG ACC GAA GGC CTG ACA GGC CTT TGG AAG GGG ACT ACT CCC AAT CTG ACA AGA AAT GTC ATC ATC AAT TGT ACA GAG CTA GTC ACC TAT GAC CTA ATG AAG GCG GCC CTT GTG AAA AAC AAA CTC CTA GCA GAC GAC TTA CCC TGC CAC TTC GTG TCA GCT CTC AGT GCC GGA TTT TGC ACA ACA GTC CTG TCC TCG CCA GTG GAT GTG GTA AAA ACC CGA TTT GTT AAT TCT CCC CCA GGA CAG TAC ACG AGT GTG CCC AAC TGC GCC ATG ACA ATG CTC ACT AAG GAA GGA CCG TTG GCT TTT TTC AAA GGA TTT GTA CCT TCC TTC TTG CGA CTC GGA TCC TGG AAC GTC ATT ATG TTT GTG TGC TTC GAA CAG CTG AAG CGA GAA CTG ATG AAG TCA GGG CCG ACC GTG GAC TGT GCC ACA 
Callorhinus_ursinus             ATG GTG GGG CCG ACA GCC TCG GAC GTG CCC CCG ACG ATG CCG GTC AAG ATC TTC TCA GCT GGC GTG GCG GCC TGT GTG GCG GAT GTG ATC ACC TTC CCG CTG GAC ACG GCC AAA GTC CGG CTC CAG ATC CAA GGT GAA TGC CAG ACC TCT AGA GCC ATT AGG TAT AAA GGT GTC CTG GGT ACA GTC ACC ACT CTG GCA AAA ACT GAA GGG CCA ATG AAA CTC TAT AGT GGG CTG CCT GCT GGT CTC CAG AGA CAA ATA AGC TTT GCC TCT TTT AGG ATC GGC CTC TAT GAC ACC GTC CAG GAG TTC TTC AGC ACA GGG AAA CAA ACA GCT AGT TTA GGA AGC AAG ATC GCA GCT GGT CTG ACA ACT GGA GGA GTG GCA GTG TTC ATC GGG CAA CCC ACA GAG GTC GTG AAG GTC AGA CTT CAA GCA CAG AGC CAT CTG CAT GGT CTC AAA CCT CGC TAC ACT GGG ACT TAC AAT GCT TAC AGA ATC ATA GCG ACA ACG GAA GGC CTG ACA GGC CTT TGG AAA GGG ACT ACT CCC AAT CTG ACA AGA AAT GTC ATC ATC AAT TGT ACA GAG CTA GTT ACA TAC GAC CTA ATG AAG GAG GCC CTT GTG AAA AAG AAG CTC CTA GCA GAC GAC TCA CCC TGC CAC TTT GTG TCA GCT CTT ATC GCT GGA TTT TGC ACA ACA GTC CTG TCC TCA CCA GTG GAT GTG GTA AAA ACC CGA TTT GTT AAT TCT CCA CCA GGA CAG TAC ACG AGT GTG CCC AAC TGT GCC ATG ACA ATG CTC ACT AAG GAA GGA CCG TTG GCT TTT TTC AAA GGA TTT GTA CCT TCC TTC TTG CGA CTC GGA TCC TGG AAC GTC ATT ATG TTT GTG TGC TTC GAA CAG CTG AAA CGA GAA CTG ATG AAG TCA GGG CAG ACT GTG AAC TGT GCC ACA 
Heterocephalus_glaber           ATG GTG AGC CCG ACG GCG TCG GAG GTG CAC CCC ACC ATG GGG GTC AAG ATC TTC TCC GCC GGA GTG GCG GCC TGT TTG GCC GAT GTG ATC ACC TTT CCG CTG GAC ACG GCC AAA GTC CGC CTG CAG ATT CAA GGC GAA AGC CAG ATC TCC AGC GGT ATT CAG TAT AAA GGT GCC CTG GGA ACT ATC ACC ACT CTG GCA AAG ACC GAA GGG CCC ATG AAA CTA TAC AGC GGG CTG CCC GCG GGC CTG CAG AGG CAA ATA AGC TTC GCC TCT CTC AGG ATC GGC CTC TAT GAC ACG GTC CAG GAG TTC TAC ACC TCG GAG AAA GAT ATA CCT AGT TTG GGA AGT AGG ATC GCA GCT GGC TTA ACC ACT GGA GGA GTG GCT GTA TTC ATC GGG CAG CCC ACA GAG GTC GTG AAA GTC AGA CTC CAA GCA CAG AGC CAA CTA CAT GGC CTC AAA CCA CGC TAC ACT GGG ACT TAC AAT GCT TAC CGA ATT ATA GCA ACA ACA GAA AGC TTG AAA AGT CTT TGG AAA GGG ACT ACT CCC AAT CTA TTG AGA AAT ATT ATC ATC AAT TGC ACG GAG CTA GTA ACA TAT GAC CTG ATG AAG GGT GCC CTT GTG AGA AAC AAG ATA CTA GCA GAT GAC GTC CCC TGC CAC TTA CTG TCT GCT CTT ATC GCT GGG TTT TGC ACA ACG CTT CTG TCC TCT CCA GTG GAT GTG GTG AAA ACT AGA TTT ATT AAT TCT CCA CCA GGA CAG TAC ATA AGT GTG CCC AGC TGT GCA ATG ACC ATG CTC AAA AAG GAA CGA TGG ACA GCT TTT TTC AAA GGA TTT GTG CCT TCG TTC CTG CGA CTT GCA TCC TGG AAT GTT ATT ATG TTT GTG TGC TTT GAG CAA CTG AAG CGT GAG TTG ACG AAG TCA AGG CAG CCC ACA GAC TAC GCC ACA 
Homo_sapiens                    ATG GGG GGC CTG ACA GCC TCG GAC GTA CAC CCG ACC CTG GGG GTC CAG CTC TTC TCA GCT GGA ATA GCG GCG TGC TTG GCG GAC GTG ATC ACC TTC CCG CTG GAC ACG GCC AAA GTC CGG CTC CAG GTC CAA GGT GAA TGC CCG ACG TCC AGT GTT ATT AGG TAT AAA GGT GTC CTG GGA ACA ATC ACC GCT GTG GTA AAA ACA GAA GGG CGG ATG AAA CTC TAC AGC GGG CTG CCT GCG GGG CTT CAG CGG CAA ATC AGC TCC GCC TCT CTC AGG ATC GGC CTC TAC GAC ACG GTC CAG GAG TTC CTC ACC GCA GGG AAA GAA ACA CCT AGT TTA GGA AGC AAG ATT TTA GCT GGT CTA ACG ACT GGA GGA GTG GCA GTA TTC ATT GGG CAA CCC ACA GAG GTC GTG AAA GTC AGA CTT CAA GCA CAG AGC CAT CTC CAC GGA ATC AAA CCT CGC TAC ACG GGG ACT TAT AAT GCG TAC AGA ATA ATA GCA ACA ACC GAA GGC TTG ACG GGT CTT TGG AAA GGG ACT ACT CCC AAT CTG ATG AGA AGT GTC ATC ATC AAT TGT ACA GAG CTA GTA ACA TAT GAT CTA ATG AAG GAG GCC TTT GTG AAA AAC AAC ATA TTA GCA GAT GAC GTC CCC TGC CAC TTG GTG TCG GCT CTT ATC GCT GGA TTT TGC GCA ACA GCT ATG TCC TCC CCG GTG GAT GTA GTA AAA ACC AGA TTT ATT AAT TCT CCA CCA GGA CAG TAC AAA AGT GTG CCC AAC TGT GCA ATG AAA GTG TTC ACT AAC GAA GGA CCA ACG GCT TTC TTC AAG GGG TTG GTA CCT TCC TTC TTG CGA CTT GGA TCC TGG AAC GTC ATT ATG TTT GTG TGC TTT GAA CAA CTG AAA CGA GAA CTG TCA AAG TCA AGG CAG ACT ATG GAC TGT GCC ACA 
Lemmus_lemmus                   ATG GTG AGC CCG ACA ACT TCC GAA GTG CAC CCC ACC ATG GGG GTC AAG ATC TTC TCA GCT GGC ATA TCC GCC TGC CTG GCA GAT ATC ATC ACC TTC CCG TTG GAC ACA GCC AAA GTC CGG CTT CAG GTA GAG GGT GAA GGC CAG ACC TCC AGT ACC ATT AGG TAT AAA GGT GTC CTG GGA ACC ATC ACT ACC CTG GCA AAA ACA GAA GGG TTG CCG AAA CTG TAC AGC GGT CTG CCT GCT GGC ATT CAA AGG CAA ATC AGC TTC GCC TCA CTC AGG ATT GGT CTC TAT GAT ACT GTC CAA GAG TAC TTC TCT TCA GGA AAA GAA ACT CCC ACT TTG GGA AAC AGG ATC TCA GCT GGC TTA ATG ACT GGA GGT GTG GCA GTA TTC ATC GGG CAA CCT ACC GAG GTG GTG AAA GTC AGA CTC CAA GCA CAG AGC CAC TTA CAC GGG ATC AAA CCC CGC TAC ACA GGG ACC TAC AAT GCT TAC AGA ATT ATA GCC ACA ACA GAA AGC TTG TCA ACA CTC TGG AAA GGG ACG ACC CCT AAT CTG ATG AGA AAT GTC ATT ATC AAT TGT ACA GAG CTG GTA ACC TAT GAC CTC ATG AAG GGG GCC CTT GTG AAC AAC CAA ATA CTC GCA GAT GAC GTG CCA TGC CAT TTA CTG TCA GCT CTT GTT GCC GGG TTT TGC ACC ACC CTC CTG GCC TCT CCG GCG GAT GTG GTG AAA ACA AGA TTC ATC AAC TCC CTA CCA GGA CAG TAC CCG AGT GTG CCC AGC TGT GCA ATG GCC ATG CTC ACC AAG GAA GGA CCG ACG GCT TTT TTC AAA GGG TTT GTG CCT TCT TTC CTG CGA CTG GCG TCC TGG AAT GTC ATC ATG TTT GTG TGC TTT GAA CAG CTG AAG AAG GAA TTG ATG AAG TCA AGG CAG ACG GTG GAC TGC ACC ACA 
Microtus_ochrogaster            ATG GTG AGC CCA ACA ACT TCC GAA GTG CAC CCC ACC ATG GGG GTC AAG ATC TTC TCA GCT GGC ATA TCC GCC TGC CTG GCA GAT ATC ATC ACC TTT CCA CTG GAC ACA GCC AAA GTC CGG CTT CAG ATC CAA GGT GAA GGC CAG ACC TCC ACT ACC ATT AGG TAT AAA GGT GTC CTG GGA ACC ATC ACC ACC CTG GCA AAA ACA GAA GGG TTG CCG AAA CTG TAC AGC GGT CTG CCT GCT GGC ATT CAG AGG CAA ATC AGC TTC GCC TCA CTC AGG ATC GGT CTC TAT GAT ACT GTT CAA GAG TAC TTC TCT TCA GGC AAA GAA ACG CCC ACT TTG GGA AAC AGG ATC TCA GCT GGC TTA TTG ACT GGA GGT GTG GCA GTA TTC ATC GGG CAA CCT ACC GAG GTC GTG AAA GTC AGA CTC CAA GCA CAG AGT CAC TTA CAC GGG ATC AAA CCC CGC TAC ACA GGG ACC TAC AAT GCT TAC AGA ATT ATA GCC ACA ACA GAA AGC TTT TCA ACC CTC TGG AAA GGG ACA ACC CCT AAT CTG ATG AGA AAT GTA ATT ATC AAT TGT ACA GAG CTG GTA ACA TAT GAC CTC ATG AAG GGG GCC CTT GTG AAC AAC CAA ATA CTG GCA GAC GAC GTG CCC TGC CAT TTA CTG TCA GCT CTT GTG GCC GGG TTT TGC ACC ACC TTC CTG GCC TCT CCG GCA GAT GTG GTA AAA ACA AGA TTC ATC AAC TCT CTA CCA GGA CAG TAC CCG AGT GTA CCC AGC TGT GCT ATG ACC ATG CTC ACC AAG GAA GGA CCA ACG GCT TTT TTC AAA GGG TTT GTG CCT TCT TTC CTG CGA CTG GCG TCC TGG AAT GTC ATC ATG TTT GTG TGC TTC GAA CAG CTG AAG AAG GAA TTG ATG AAG TCC AGG CAG ACG GTG GAC TGC ACC ACA 
Mus_musculus                    ATG GTG AAC CCG ACA ACT TCC GAA GTG CAA CCC ACC ATG GGG GTC AAG ATC TTC TCA GCC GGA GTT TCA GCT TGC CTG GCA GAT ATC ATC ACC TTC CCG CTG GAC ACT GCC AAA GTC CGC CTT CAG ATC CAA GGT GAA GGC CAG GCT TCC AGT ACC ATT AGG TAT AAA GGT GTC CTA GGG ACC ATC ACC ACC CTG GCA AAA ACA GAA GGA TTG CCG AAA CTG TAC AGC GGT CTG CCT GCG GGC ATT CAG AGG CAA ATC AGC TTT GCC TCA CTC AGG ATT GGC CTC TAC GAC TCA GTC CAA GAG TAC TTC TCT TCA GGG AGA GAA ACA GCC TCT CTC GGA AAC AAG ATC TCA GCC GGC TTA ATG ACT GGA GGT GTG GCA GTG TTC ATT GGG CAG CCT ACA GAG GTC GTG AAG GTC AGA ATG CAA GCC CAG AGC CAT CTG CAT GGG ATC AAA CCC CGC TAC ACG GGG ACC TAC AAT GCT TAC AGA GTT ATA GCC ACC ACA GAA AGC TTG TCA ACA CTT TGG AAA GGG ACG ACC CCT AAT CTA ATG AGA AAT GTC ATC ATC AAT TGT ACA GAG CTG GTA ACA TAT GAC CTC ATG AAG GGG GCC CTT GTA AAC AAC AAA ATA CTG GCA GAT GAC GTC CCC TGC CAT TTA CTG TCA GCT CTT GTT GCC GGG TTT TGC ACC ACA CTC CTG GCC TCT CCA GTG GAT GTG GTA AAA ACA AGA TTC ATC AAC TCT CTG CCA GGA CAG TAC CCA AGC GTA CCA AGC TGT GCG ATG TCC ATG TAC ACC AAG GAA GGA CCG ACG GCC TTT TTC AAA GGG TTT GTG GCT TCT TTT CTG CGA CTC GGG TCC TGG AAC GTC ATC ATG TTT GTG TGC TTT GAA CAG CTG AAA AAA GAG CTG ATG AAG TCC AGA CAG ACA GTG GAT TGT ACC ACA 
Mustela_erminea                 ATG GTG GGC CCC ACA GCC TTG GAC GTG CCC CCG ACG ATG ACG GTC AAG ATC TTC TCC GCT GGC GTG GCT GCC TGT GTG GCG GAT GCC ATC ACG TTC CCG CTG GAC ACC GTC AAA GTC CGG CTC CAG ATC CAA GGT GAA TGC CAG ACC TCC AGA GCC ATC AGG TAT AAA GGT GTC CTG GGA ACA ATC ACC ACT CTG GCA AAA ACA GAA GGG CCA GTG AAA CTC TAT AGT GGG CTG CCT GCT GGT CTC CAG AGA CAA ATA AGC TTT GCT TCT CTT CGG ATC GGC CTC TAC GAC ACT GTC CAG GAG TTC TTC AGC GCA GGA AAA GAA ACA CCT AGT TTA GGA AGC AAG ATC TCA GCT GGT CTG ACG ACT GGA GGG GTG GCA GTA TTC ATC GGG CAA CCC ACA GAG GTC GTG AAG GTC AGA CTT CAA GCA CAG AGC CAT CTG CAT GGT CTC AAA CCT CGC TAC ACC GGG ACT TAC AAT GCT TAC AGA GTC ATA GCG ACA ACA GAA GGC CTG ATG GGC CTT TGG AAA GGA ACT ACT CTC AAT CTG ACA AGA AAT GTC ATC ATT AAT TGT ACA GAG CTG GTT ACA TAT GAC CTA ATG AAG GAA GGC CTT GTG AAA AAC AAA CTC CTG GCA GAT GAC TTA CCC TGC CAC TGT GTG TCA GCC CTT ATC GCC GGA TTT TGC ACA ACG GTC CTG TGC TCG CCA GTG GAT GTG GTA AAA ACC CGA TTC ATT AAT TCT CCA CCA GGC CAG TAC AAA AGT GTG CCC AAC TGT GCC ATG ACA ATG TTC ACC AAG GAA GGA CCG CCG GCT TTT TTC AAA GGA TTT GTA CCT TCC TTC TTG CGA TTC GGA TCC TGG AAC GTC ATC ATG TTT GTG TGC TTC GAA CAG CTG AAA CGA GAG CTG ACG AAG TCA GGG CGG ACC GTG GAC TGT GCC ACA 
Mustela_putorius_furo           ATG GTG GGC CCC ACA GCC TTG GAC GTG CCC CCG ACG ATG ACG GTC AAG ATC TTC TCC GCT GGC GTG GCT GCC TGT GTG GCG GAT GCC ATC ACG TTC CCG CTG GAC ACC GTC AAA GTC CGG CTC CAG ATC CAA GGT GAA TGC CAG ACC TCC AGA GCC ATC AGG TAT AAA GGT GTC CTG GGA ACA ATC ACC ACT CTG GCA AAA ACA GAA GGG CCA GTG AAA CTC TAT AGT GGG CTG CCT GCT GGT CTC CAG AGA CAA ATA AGC TTT GCT TCT CTT CGG ATC GGC CTC TAC GAC ACT GTC CAG GAG TTC TTC AGC GCG GGA AAA GAA ACA CCT AGT TTA GGA AGC AAG ATC TCA GCT GGT CTG ACG ACT GGA GGG GTG GCA GTA TTC ATC GGG CAA CCC ACA GAG GTC GTG AAG GTC AGA CTT CAA GCA CAG AGC CAT CTG CAT GGT CTC AAG CCT CGC TAC ACC GGG ACT TAC AAT GCT TAC AGA GTC ATA GCG ACA ACA GAA GGC CTG ATG GGC CTT TGG AAA GGA ACT ACT GTC AAT CTG ACA AGA AAT GTC ATC ATT AAT TGT ACA GAG CTG GTT ACA TAT GAC CTA ATG AAG GAA GGC CTT GTG AAA AAC AAA CTC CTG GCA GAT GAC TTA CCC TGC CAC TGT GTG TCA GCC CTT ATC GCC GGA TTT TGC ACA ACG GTC TTG TGC TCG CCA GTG GAT GTG GTA AAA ACC CGA TTC ATT AAT TCT CCA CCA GGC CAG TAC ACA AGT GTG CCC AAC TGC GCC ATG ACA ATG TTC ACC AAG GAA GGA CCG CTG GCT TTT TTC AAA GGA TTT GTA CCT TCC TTC TTG CGA TTC GGA TCC TGG AAC GTC ATC ATG TTT GTG TGC TTC GAA CAG CTG AAG CGA GAA CTG ACA AAG TCA AGG CGG ACC GTG GAC TGT GCC ACA 
Myodes_glareolus                ATG GTG AGC CAG ACA ACT TCC GAA GTG CAC CCC ACC ATG GGG GTC AAG ATC TTC TCA GCT GGC ATA TCT GCC TGC CTG GCA GAT ATC ATC ACC TTC CCG TTG GAC ACA GCC AAA GTC CGG CTT CAG ATC CAA GGT GAA GGC CAG ACC TCC AGT ACC ATT AGG TAT AAA GGT GTC CTG GGA ACC ATC ACC ACC CTG GCA AAA ACA GAG GGG TGG CAG AAA CTG TAC AGC GGT CTG CCC GCT GGC ATT CAG AGG CAA ATC AGC TTC GCC TCC CTC AGG ATT GGT CTC TAT GAT ACT GTC CAA GAG TAC TTC TCT TCA GGG AAA GAA ACG CCC ACT TTG GGA AAC AGG ATC TCA GCT GGC TTA ATG ACA GGA GGT GTG GCA GTA TTC ATC GGG CAA CCT ACC GAG GTT GTG AAA GTC AGA CTC CAA GCA CAG AGC CAC TTA CAC GGG ATC AAA CCC CGC TAC ACA GGG ACC TAC AAT GCT TAC AGA ATT ATA GCC ACG ACA GAA AGC TTG TCA ACC CTC TGG AAA GGG ACG ACC CCT AAT CTG ATG AGA AAT GTT ATT ATC AAT TGT ACA GAG CTG GTA ACA TAT GAC CTC ATG AAG GGA GCC CTT GTG AAC AAC CAA ATA CTG GCA GAC GAC GTG CCA TGT CAT TTA CTG TCA GCG CTT GTG GCC GGG TTT TGC ACC ACC TTC CTG GCC TCT CCG GCG GAC GTG GTA AAA ACA AGA TTC ATC AAC TCT CTA CCA GGA CAG TAC CCG AGT GTA CCC AGC TGT GCA ATG ACC ATG CTC ACC AAG GAA GGA CCA ACG GCT TTT TTC AAA GGG TTT GTG CCT TCT TTC CTG AGA CTG GCG TCC TGG AAT GTC ATC ATG TTT GTG TGC TTC GAA CAG CTG AAG AAG GAA TTG ATG AAG TCA AGG CAG ACG GTG GAC TGC ACC ACA 
Neovison_vison                  ATG GTG GGC CCC ACA GCC TTG GAC GTG CCC CCG ACG ATG ACG GTC AAG ATC TTC TCC GCT GGC GTG GCG GCC TGT GTG GCG GAT GCC ATC ACG TTC CCG CTG GAC ACC GTC AAA GTC CGG CTC CAG ATC CAA GGT GAA CGC CAG ACC TCC AGA GCC ATC AGG TAT AAA GGT GTC CTG GGA ACA ATC ACC ACT CTG GCA AAA ACA GAA GGG CCA GTG AAA CTC TAT AGT GGG CTG CCT GCT GGT CTC CAG AGA CAA ATA AGC TTT GCT TCT CTT CGG ATC GGC CTC TAC GAC ACC GTC CAG GAG TTC TTC AGC ACA GGA AAA GAA ACA CCT AGT TTA GGA AGC AAG ATC TCA GCT GGT CTG ACG ACT GGA GGG GTG GCA GTA TTC ATC GGG CAA CCC ACA GAG GTC GTG AAG GTC AGA CTT CAA GCA CAG AGC CAT CTG CAT GGT CTC AAA CCT CGC TAC ACC GGG ACT TAC AAT GCT TAC AGA GTC ATA GCG ACA ACA GAA GGC CTG ATA GGC CTT TGG AAA GGA ACT ACT CTC AAT CTG ACA AGA AAC GTC ATC ATT AAT TGT ACA GAG CTG GTT ACA TAT GAC CTA ATG AAG GAA GGC CTT GTG AAA AAC AAA CTC CTG GCA GAT GAC TTA CCC TGC CAC TTT GTG TCA GCC CTT ATC GCC GGA TTT TGC ACA ACG GTC CTG TGC TCG CCA GTG GAT GTG GTA AAA ACC CGA TTC ATT AAT TCT CCA CCA GGC CAG TAC ACA AGT GTG CCC AAC TGC GCC ATG ACA ATG TTC ACC AAG GAA GGA CCG CTG GCT TTT TTC AAA GGA TTT GTA CCT TCC TTC TTG CGA TTC GGA TCC TGG AAC GTC ATC ATG TTT GTG TGC TTC GAA CAG CTG AAG CGA GAA CTG ATG AAG TCA GGG CGG ACC GTG GAC TGT GCC ACA 
Ochotona_princeps               ATG GTG GGC ACC ACA GCC ACG GAC GTG CCC CCC ACC ATG GGG GTC AAG ATC TTC TCA GCT GGA GTG GCG GCC TGC CTG GCG GAT GTG ATC ACC TTT CCG CTG GAC ACA GCA AAA GTC CGC CTA CAG ATC CAA GGC GAG TGT CAG ACC ACC AGC GGC ATC AGG TAC AAA GGT GTT CTG GGT ACC ATC ACC ACA CTG GCA AAA ACG GAA GGG CCG CTG AAG CTC TAC AGC GGG CTG CCT GCC GGC CTC CAG AGA CAG ATC AGC TTC GCC TCG CTC AGG ATT GGC CTC TAC GAC ACA GTG CAG GAG TTC TGG GGA GGG GAG GAA GTT GAC TCT AGC CAG TTA AGC AAG ATC TGT GCT GGT CTA ACG ACT GGA GGA GTG GCC GTG TTC ATC GGG CAA CCC ACA GAG GTT GTG AAA GTC CGA CTC CAG GCG CAG AGC CAC CTG CAT GGT CTC AAA CCT CGC TAC ACG GGG ACT TAC AAT GCT TAC AGA ATT ATA GCC ACA ACT GAG AGC TTG TCC ACT CTG TGG AAA GGG ACT ACT CCT AAT CTG TTA AGG AAT ATT ATC ATT AAT TGT ACA GAG CTC GTA ACC TAC GAC CTA ATG AAG GGG GCC CTT GTG AGA AAT GAC ATA CTA GCA GAT GAT GTT CCC TGC CAC TTG CTG TCG GCG CTT ATT GCT GGA TTT TGC ACA ACG CTT CTG TCC TCT CCA GTG GAT GTG GTG AAA ACC AGA TTT ATT AAC TCT CCC CAA GGC CAG TAC ACA AGT GTG CCC AGC TGT GCA ATG TCA ATG TTA ACT AAG GAA GGA CCG ACT GCT TTT TTC AAA GGA TTT GCA CCT TCC TTT CTG CGA CTC GCC TCG TGG AAT GTC ATC ATG TTT GTG AGC TTT GAA AAG CTG AAG CGT GAA CTG ATG AAG TCC AGG CAG ACG GTG GAC TGT GCC ACA 
Oryctolagus_cuniculus           ATG GTG GGC ACC ACG ACC ACG GAC GTG CCC CCA ACC ATG GGG GTC AAG ATC TTC TCA GCT GGA GTG GCA GCC TGC CTG GCG GAC GTG ATC ACC TTT CCG CTG GAC ACC GCC AAA GTC CGG CAA CAG ATC CAA GGC GAG TTC CCG ATC ACC AGC GGC ATC AGG TAC AAA GGT GTC CTG GGG ACA ATC ACC ACC CTG GCA AAA ACG GAA GGG CCC CTG AAA CTC TAC AGC GGG TTG CCC GCC GGC CTC CAG AGA CAA ATC AGC TTC GCC TCG CTC AGG ATC GGC CTC TAC GAC ACG GTG CAG GAG TTC TTC ACC TCG GGG GAA GAA ACA CCG AGT TTA GGA AGC AAG ATC TCG GCC GGC CTA ACA ACT GGA GGC GTG GCG GTG TTC ATC GGG CAG CCC ACA GAG GTC GTG AAA GTC AGG CTG CAA GCG CAG AGC CAC CTG CAC GGT CTC AAG CCT CGC TAC ACG GGG ACG TAC AAT GCC TAC AGG ATT ATA GCT ACA ACT GAG AGC TTG ACC AGT CTG TGG AAA GGG ACA ACT CCT AAT CTG TTA AGG AAT GTC ATT ATT AAC TGT ACA GAG CTC GTA ACC TAC GAC CTA ATG AAG GGG GCC CTT GTG AGA AAC GAA ATA CTA GCA GAT GAT GTT CCC TGC CAC TTC GTG TCA GCT CTT ATC GCT GGA TTT TGC ACA ACG CTT CTG TCC TCT CCA GTG GAT GTG GTG AAA ACC AGA TTT ATT AAC TCT CCA CCG GGA CAA TAT GCG AGT GTG CCC AAC TGT GCA ATG ACA ATG TTC ACT AAG GAA GGA CCA ACG GCT TTT TTC AAA GGA TTT GTA CCT TCC TTC CTG CGA CTC GGA TCA TGG AAC GTC ATC ATG TTC GTG TGC TTT GAA AAG CTG AAA GGA GAA CTC ATG AGG TCA AGG CAG ACT GTG GAC TGT GCC ACA 
Phoca_vitulina                  ATG GCG GGC CCG ACA GCC TCG GAC GTG CCC CCG ACG ATG CCG GTC AAG ATC TTC TCA GCT GGC GTG GCG GCC TGT GTG GCG GAT GTG ATC ACC TTC CCG CTG GAC ACG GCC AAA GTT CGG CTC CAG ATC CAA GGT GAA TGC CAG ACC TCC AGA GCC ATT AGG TAT AAA GGT GTC CTG GGT ACA GTC ACC ACT CTG GCA AAA ACT GAA GGG CCA ATG AAA CTC TAT AGT GGG CTG CCT GCT GGT CTC CAG AGA CAA ATA AGC TTT GCC TCT CTT AGG ATC GGC CTC TAC GAC ACC GTC CTG GAG TTC TTC AGC ACA GGG AAA GAA ACA GCT GGT TTA GGC AGC AAG ATC GCA GCT GGT CTG ACG ACT GGA GGA GTG GCA GTA TTC ATC GGG CAA CCC ACA GAG GTC GTG AAG GTC AGA CTT CAA GCA CAG AGC CAC CTG CAT GGT CTC AAA CCT CGC TAC ACT GGG ACT TAC AAC GCT TAC AGA ATC ATA GCG ACA ACG GAA GGC CTG ACA GGC CTT TGG AAA GGG ACT ACT CCC AAT CTG ACA AGA AAT GTC ATC ATC AAT TGT ACA GAG CTA GTT ACA TAC GAC CTA ATG AAG GAG GCC CTT GTG AAA AAG AAA CTC CTA GCA GAC GAC TTA CCC TGC CAC TTC GTG TCA GCT CTT ATC GCT GGA TTT TGC ACA ACA GTC CTG TCC TCG CCA GTG GAT GTG GTA AAA ACC CGA TTT GTT AAT TCT CCA CCA GGA CAG TAC ACG AGT GTG CCC AAC TGT GCC ATG ACA ATG CTC ACT AAG GAA GGA CCG TTG GCT TTT TTC AAA GGA TTT GTA CCT TCC TTC TTG CGA CTC GGA TCC TGG AAC GTC ATT ATG TTT GTG TGC TTC GAA CAG CTG AAA CGA GAA CTG ATG AAG TCA GGG CAG ACC GTG AAC TGT GCC ACA 
Rattus_norvegicus               ATG GTG AGT TCG ACA ACT TCC GAA GTG CAA CCC ACC ATG GGG GTC AAG ATC TTC TCA GCC GGC GTT TCT GCC TGC CTA GCA GAC ATC ATC ACC TTC CCG CTG GAC ACC GCC AAA GTC CGC CTT CAG ATC CAA GGT GAA GGC CAG GCT TCC AGT ACT ATT AGG TAT AAA GGT GTC TTA GGG ACC ATC ACC ACC CTG GCC AAG ACA GAA GGA TTG CCG AAA CTG TAC AGC GGT CTG CCT GCT GGC ATC CAG AGG CAA ATC AGC TTT GCT TCC CTC AGG ATT GGC CTC TAC GAT ACG GTC CAA GAG TAC TTC TCT TCA GGG AGA GAA ACG GCC TCT TTG GGA AGC AAG ATC TCG GCT GGC TTG ATG ACG GGT GGC GTG GCG GTA TTC ATT GGG CAG CCC ACA GAG GTG GTG AAG GTC AGA ATG CAA GCA CAA AGC CAT CTG CAC GGG ATC AAA CCC CGC TAC ACT GGG ACC TAC AAT GCT TAC AGA GTT ATA GCC ACC ACA GAA AGC TTG TCA ACA CTG TGG AAA GGG ACG ACT CCT AAT CTA ATG AGA AAT GTC ATC ATC AAC TGT ACA GAG CTG GTG ACA TAT GAC CTC ATG AAG GGG GCC CTT GTG AAC CAC CAC ATA CTG GCA GAT GAC GTC CCC TGC CAT TTA CTG TCA GCT CTT GTC GCC GGG TTT TGC ACC ACA CTC CTG GCC TCT CCG GTG GAT GTG GTA AAA ACG AGA TTC ATC AAC TCT CTA CCA GGA CAG TAC CCA AGT GTA CCC AGC TGT GCA ATG ACC ATG TAC ACC AAG GAA GGA CCG GCA GCC TTT TTC AAA GGG TTT GCG CCT TCT TTT CTG CGA CTC GGA TCC TGG AAC GTC ATC ATG TTT GTG TGC TTT GAA CAG CTG AAG AAA GAG CTG ATG AAG TCC CGG CAG ACA GTG GAC TGC ACC ACA 
Sorex_araneus                   ATG GTG GCC CAC GCA GCC GAC GAC GTG CAC CCC ACC ATG CCC ATG AGG ATC TTC TCC GCC GGG GTG TCC GCC TGC GTG GCT GAC ATC ATC ACC TTC CCG CTG GAC ACC GCC AAA GTC CGG CTG CAG GTG CAA GGA GAA AGC CCC AAC GCC CCT GGC ATT AAG TAC AAA GGG GTG CTG GGA ACC ATC GCC ACG GTG GCC AAG ACA GAG GGA CCC CTG AAA CTC TAC GGG GGG CTC CCC GCG GGC ATC CAG AGG CAG ATC AGC TCT GCC TCG CTC CGC ATC GGC CTC TAC GAC ACG ATG CAG GAA TAC TTC GAC GTC CAC AAA GAG ACC GCA ACC TTA GGG AAC AAG ATC ATG GCT GGC CTC ATG ACC GGC GGT ATG GCG GTT CTC ATC GGG CAG CCC ACC GAG GTG GCC AAG GTC AGG ATG CAG GCA CAG AGC AAA CTG CAC TGG TTC AAG CCC CGT TAC ACG GGG ACG TAC AAC GCC TAC TAC GTG ATC GTG ACC ACG GAG GGC CTC CTT GGG CTG TGG AAA GGG ACA AGT CTC AAC CTG ACA AGG AAC GTC ATC ATC AAT TGC ACG GAG CTG GTG GTA TAC GAC GTC CTC AAG GAG GCC CTG GTG AAG AAC AAC CTG CTA GCA GAT GAC GTG CCT TGC CAC TTC GTG TCG GCG CTG GTG GCT GGG TTT TGC ACG ACG GCG CTG TCT TCT CCC GTG GAT GTG GTG AAA ACT AGG TTC ATC AAC TCC CCG CCG GGC CAC TAC CCG AGC GTG CAC AGC TGT GCC CTC AAC ATG CTC AGG AAG GAA GGC CCC TCG GCT TTC TTC AAA GGA TTT GTG CCC TCC TTC CTG CGG CTG GGG TCC TGG ACC GTC ATC ATG TAC GTG TGC TTC GAA CAG CTG AAG AAA GAA CTT GCC AAG TCC AGG CAG ACC GTG GAC TGC AGC ACA 
Talpa_europaea                  ATG GTC GCC TCC ACC GCC CCG GAC CAG GCC CCC ACC ATG CCC ATC AAG ATC GTC TCT GCA GGG CTG GCA GCC TGC ACC GCG GAT GTG ATC ACC TTC CCG CTG GAC ACC GCC AAA GTC CGG CTC CAG ATT CAA GGC GAA ACC CCG ATC TCC AGT GGC ATC AGG TAT AAA GGC GTC CTG GGC ACC ATC ACC ACC CTG ATC AAG ACG GAG GGG CCC ATG AAG CTC TAC AGC GGG CTG CCC GCG GGC ATC CAG AGG CAG ATC AGC TTC GCC TCT CTG AGG ATC GGC CTC TAC GAC TCC GTG CAG GAG TTC TTC AGC TCG GGC ACG GAC GGC CCC ACT CTG GGA AGC AAG ATC TCC GCA GGC CTG ACG ACT GGC GGC GTG GCC GTG TTC ATC GGG CAG CCC ACG GAG GTG GCG AAG GTC AGG ATG CAA GCC CAG AGC CAC CTG CAC GGC CTC AAG CCC CGC TAC ACC GGC ACC TAC AAC GCT TAC AGA GTC ATA GCC ACC ACG GAA GGC TTC CTG GGG CTT TGG AAA GGG ACC AGT CTC AAC CTG ACA AGG AAT GTG ATC ATC AAC TGC ACA GAG CTG GTG ATG TAT GAC CTG ATG AAG GAG GCC CTT GTG AAG AAC AAG GTG CTA GCA GAT GAC GTC CCC TGC CAC GTC GTG TCG GCT CTC GTC GCT GGA TTT TGC ACG ACG GCG CTG GCT TCC CCG GTG GAC GTG GTG AAG ACC AGA TTC ATC AAT TCT CCC CCG GGA CAG TAC CCG CAC GTG CAC AGC TGC GCG CTG GCC ATG CTG CAC AAG GAA GGG CTG TCG GCT TTC TTC AAA GGG TTC GTG CCG TCC TTC CTG CGG CTG GGC TCC TGG ACC GTC ATC ATG TTC GTG TGC TTT GAG CGG CTG AAG CGC GAG CTG ATG AAG TCC AGG CAG ACG GTG GAC TGT GCC ACA 
Talpa_occidentalis              ATG GTC GCC TCC ACC GCC CCA GAC CAG GCC CCC ACC ATG CCC ATC AAG ATC TTC TCC GCA GGG CTG GCG GCC TGC ACC GCG GAT GTG ATC ACC TTC CCT CTG GAC ACC GCC AAA GTC CGG CTC CAG ATT CAA GGC GAA ACC CCG ATC TCC AGT GGC ATC AGG TAT AAA GGC GTC CTG GGC ACC ATC ACC ACC CTG ATC AAG ACG GAG GGG CCC ATG AAG CTC TAC AGC GGG CTG CCC GCG GGC ATC CAG AGG CAG ATC AGC TTC GCC TCT CTG AGG ATC GGC CTC TAC GAC TCC GTG CAG GAG TTC TTC AGC TCG GGC ACG GAC GGC CCC ACT CTG GGA AGC AAG ATC TCC GCA GGC CTG ACG ACT GGC GGC GTG GCC GTG TTC ATC GGG CAG CCC ACG GAG GTG GCG AAG GTC AGG ATG CAA GCC CAG AGC CAC CTG CAC GGC CTC AAG CCC CGC TAC ACC GGC ACC TAC AAC GCT TAC AGA GTC ATA GCC ACC ACG GAA GGC TTC CTG GGG CTT TGG AAA GGG ACC AGT CTC AAC CTG ACA AGG AAT GTG ATC ATC AAC TGC ACA GAG CTG GTG ATG TAT GAC CTG ATG AAG GAG GCC CTT GTG AAG AAC AAG GTG CTA GCA GAT GAC GTC CCC TGC CAC GTC GTG TCG GCT CTC GTC GCT GGG TTT TGC ACG ACG GCG CTG GCT TCC CCG GTG GAC GTG GTG AAG ACC AGA TTC ATC AAT TCT CCC CCG GGA CAG TAC CCG CAC GTG CAC AGC TGC GCG CTG GCC ATG CTG CAC AAG GAA GGG CTG TCG GCT TTC TTC AAA GGG TTC GTG CCG TCC TTC CTG CGG CTG GGC TCC TGG ACC GTC ATC ATG TTC GTG TGC TTT GAG CGG CTG AAG CGC GAG CTG ATG AAG TCC AGG CAG ACG GTG GAC TGT GCC ACA 



Printing out site pattern counts


        25        906  P

Erinaceus_europaeus              --- AAA AAA AAA AAA AAA AAA AAC AAC AAC AAC AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAT AAT ACA ACA ACA ACA ACA ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC ACG ACG ACG ACG ACG ACG ACT ACT ACT ACT AGA AGC AGC AGC AGC AGC AGC AGC AGG AGG AGG AGG AGT ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATG ATG ATG ATG ATG ATG ATT ATT CAC CAC CAC CAC CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAT CCA CCC CCC CCC CCC CCC CCC CCG CCG CCG CCG CCT CCT CCT CGC CGC CGC CGG CGG CGG CGG CGG CGG CGG CTC CTC CTC CTC CTC CTC CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT GAA GAA GAA GAC GAC GAC GAC GAC GAC GAC GAC GAG GAG GAG GAG GAG GAG GAT GAT GAT GCA GCA GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCG GCG GCT GCT GCT GCT GCT GGA GGA GGC GGC GGC GGC GGC GGC GGC GGC GGC GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGT GTA GTC GTC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG TAC TAC TAC TAC TAC TAC TAC TCA TCC TCC TCC TCC TCC TCG TCG TCG TCG TCT TCT TCT TCT TGC TGC TGC TGC TGC TGG TGG TGT TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTG TTT TTT TTT TTT TTT
Ictidomys_tridecemlineatus       TCA AAA AAA AAA AAG ACA GAT AAT AAT ACA AGC AAA AAA AAA AAA AAA AAA AAG AAG AAG CAG AAC AAC ACA ACA ACC ACC TTG AAC ACA ACC ACC ACC ACC ACG ACT AGC CAC CAC CCC GCC ACA ACA ACA ACC ACT TCG ACA ACC ACT AGC AGG AAT ACC ACC ACT AGC AGC TTC AAC AAG AGA AGA AGC ATC ATC ATC ATC ATC ATC ATC ATC ATT ATT ATT GTG TTC TTT ATG ATG ATG ATG ATG GTG ATC ATT CAC CAC CAC CCC CAA CAA CAA CAA CAG CAG CAG CAG CAG CAG AGC CCT CCC CCC CCC CCG CCG CCT CCA CCG CCG CCT ACC CCC CCT AGA AGG CGC AAA ACG AGG AGG CGA CGA CGG CCT CTA CTC CTC CTG CTT AGG ATG CTA CTA CTC CTC CTC CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT CTT TTC TTG TTG TTG TTG CTG GAA GAA GAA AGA GAA GAC GAC GAC GAT GAT GAT GAA GAA GAG GAG GAG GGG GAC GAT GAT GCA GCC GCA GCA GCA GCA GCA GCC GCC GCC GCC GCC GCG GCG GCT GCT TCA ACA GCT CCC CTC GCC GCG TCC AGC GGA AGC GCA GGA GGA GGC GGG GGG GGT GGT AGC GGA GGA GGA GGA GGA GGA GGA GGC GGG GGG GGG GGG GGG GGG GTG GTG AGT ACA ATC CTC GTC GTC GTC GTC ATA ATC ATT CTA CTG CTG GCT GTA GTA GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG GTG TAC TAC TAC TAT TAT TAT TAT TCC TCC TCC TCC TCC TCT TCA TCC TCT TCT ACC GGC TCA TCG TGC TGC TGC TGC TGT AGA TGG TGC CAG CTG GTC TTC TTC TTC TTC TTC TTC TTT ATG TTC TTC TTT TTT TTT
Marmota_flaviventris             TCA AAA AAA AAA AAG ACA AAT AAT AAT ACA AGC AAA AAA AAA AAA AAA AAA AAG AAG AAG CAG AAC AAT ACA ACG ACC ACT TTG AAC ACA ACC ACC ACC ACC ACA ACT AGC CAC TAC CCC GCC ACA ACA ACA ACC ACC TCG ACA ACC ACT AGT AGG AAT ACC ACC ACT AGC AGC TTC AAC AAG AGA AGA AGT ATA ATC ATC ATC ATC ATC ATC ATC ATT ATT ATT GTG TTC TTT ATG ATG ATG ATG ATG GTG ATC ATT CAC CAC CAC CCC CAA CAA CAA CAA CAG CAG CAG CAG CAG CAG AGC CCG CCC CCC CCT CCG CCG CCT CCA CCG CCG CCA ACC CCC CCT AGA AGG CGC AAA AAG AGG AGG CGA CGA CGG CCT CTA CTC CTC CTG CTT AGG ATG CTA CTA CTC CTC CTC CTG CTG CTG CTG CTG CTG CTG TTG TTG CTT CTT TTC TTG TTG TTG TTG CTG GAA GAA GAA AGA GAA GAC GAC GAC GAT GAT GAT GAA GAA GAG GAG GAG GGG GAC GAT GAT GCA GCC GCA GCA GCA GCA GCG GCA GCC GCC GCC GCC GCG GCG GCT GCT TCA ACA GCT CCC CTT GCC GCG TCC AGC GGA AGC GCA GGA GGT GGC GGG GGG GGG GGT AGT GGA GGA GGA GGA GGA GGA GGA GGC GGG GGG GGG GGG GGG GGG GTG GTG AGT ACA ATC GTC GTC GTC GTC GTC ATA ATC ATT GTA CTG CTG GCT GTA GTG GTC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG TAC TAC TAC TAT TAT TAT TAT TCC TCC TCC TCC TCC TCT TCA TCC TCT TCT ACC GGC TCA TCG TGC TGC TGC TGC TGT AGA TGG TGC CAG CTG GTC TTC TTC TTC TTC TTC TTC TTT ATG TTC TTC TTT TTT TTT
Marmota_marmota                  TCA AAA AAA AAA AAG ACA AAT AAT AAT ACA AGC AAA AAA AAA AAA AAA AAA AAG AAG AAG CAG AAC AAC ACA ACG ACC ACT TTG AAC ACA ACC ACC ACC ACC ACA ACT AGC CAC CAC CCC GCC ACA ACA ACA ACC ACC TCG ACA ACC ACT AGT AGG AAT ACC ACC ACT AGC AGC TTC AAC AAG AGA AGA AGT ATA ATC ATC ATC ATC ATC ATC ATC ATT ATT ATT GTG TTC TTT ATG ATG ATG ATG ATG GTG ATC ATT CAC CAC CAC CCC CAA CAA CAA CAA CAG CAG CAG CAG CAG CAG AGC CCG CCC CCC CCT CCG CCG CCT CCA CCG CCG CCA ACC CCC CCT AGA AGG CGC AAA AAG AGG AGG CGA CGA CGG CCT CTA CTC CTC CTG CTT AGG ATG CTA CTA CTC CTC CTC CTG CTG CTG CTG CTG CTG CTG TTG TTG CTT CTT TTC TTG TTG TTG TTG CTG GAA GAA GAA AGA GAA GAC GAC GAC GAT GAT GAT GAA GAA GAG GAG GAG GGG GAC GAT GAT GCA GCC GCA GCA GCA GCA GCG GCA GCC GCC GCC GCC GCG GCG GCT GCT TCA ACA GCT CCC CTT GCC GCG TCC AGC GGA AGC GCA GGA GGT GGC GGG GGG GGG GGT AGT GGA GGA GGA GGA GGA GGA GGA GGC GGG GGG GGG GGG GGG GGG GTG GTG AGT ACA ATC GTC GTC GTC GTC GTC ATA ATC ATT GTA CTG CTG GCT GTA GTG GTC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG TAC TAC TAC TAT TAT TAT TAT TCC TCC TCC TCC TCC TCT TCA TCC TCT TCT ACC GGC TCA TCG TGC TGC TGC TGC TGT AGA TGG TGC CAG CTG GTC TTC TTC TTC TTC TTC TTC TTT ATG TTC TTC TTT TTT TTT
Marmota_monax                    TCA AAA AAA AAA AAG ACA AAT AAT AAT ACA AGC AAA AAA AAA AAA AAA AAA AAG AAG AAG CAG AAC AAC ACA ACG ACC ACT TTG AAC ACA ACC ACC ACC ACC ACA ACT AGC CAC CAC CCC GCC ACA ACA ACA ACC ACC TCG ACA ACC ACT AGT AGG AAT ACC ACC ACT AGC AGC TTC AAC AAG AGA AGA AGT ATA ATC ATC ATC ATC ATC ATC ATC ATT ATT ATT GTG TTC TTT ATG ATG ATG ATG ATG GTG ATC ATT CAC CAC CAT CCC CAA CAA CAA CAA CAG CAG CAG CAG CAG CAG AGC CCG CCC CCC CCT CCG CCG CCT CCA CCG CCT CCA ACC CCC CCT AGA AGG CGC AAA AAG AGG AGG CGA CGA CGG CCT CTA CTC CTC CTG CTT AGG ATG CTA CTA CTC CTC CTT CTG CTG CTG CTG CTG CTG CTG TTG TTG CTT CTT TTC TTG TTG TTG TTG CTG GAA GAA GAA AGA GAA GAC GAC GAC GAT GAT GAT GAA GAA GAG GAG GAG GGG GAC GAT GAT GCA GCC GCA GCA GCA GCA GCG GCA GCC GCC GCC GCC GCG GCG GCT GCT TCA ACA GCT CCC CTT GCC GCG TCC AGC GGA AGC GCA GGA GGT GGC GGG GGG GGG GGT AGT GGA GGA GGA GGA GGA GGA GGA GGC GGG GGG GGG GGG GGG GGG GTG GTG AGT ACA ATC GTC GTC GTC GTC GTC ATA ATC ATT GTA CTG CTG GCT GTA GTG GTC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG TAC TAC TAC TAT TAT TAT TAT TCC TCC TCC TCC TCC TCT TCA TCT TCT TCT ACC GGC TCA TCG TGC TGC TGC TGC TGT AGA TGG TGC CAG CTG GTC TTC TTC TTC TTC TTC TTC TTT ATG TTC TTC TTT TTT TTT
Urocitellus_parryii              TCA AAA AAA AAA AAG ACA AAT AAC AAT ACA AGC AAA AAA AAA AAA AAA AAA AAG AAG AAG CAG AAC AAC ACA ACA ACC ACC TTG AAC ACA ACC ACC ACC ACC ACA ACT AGC CAC CAC CCC GCC ACA ACA ACA ACC ACC TCG ACA ACC ACT AGT AGG AAT ACC ACC ACT AGC AGC TTC AAC AAG AGA AGA AGC ATA ATC ATC ATC ATC ATC ATC ATC ATT ATT ATT GTG TTC TTT ATG ATG ATG ATG ATG GTG ATC ATT CAC CAC CAT CCC CAA CAA CAA CAA CAG CAG CAG CAG CAG CAG AGC CCT CCC CCC CCT CCG CCG CCT CCA CCG CCG CCA ACC CCC CCT AGA AGG CGC AAA ACG AGG AGG CGA CGA CGG CCT CTA CTC CTC CTG CTT AGG ATG CTA CTA CTC CTC CTC CTG CTG CTG CTG CTG CTG CTG TTG TTG CTT CTT TTC TTG TTG TTG TTG CTG GAA GAA GAA AGA GAA GAC GAC GAC GAT GAT GAT GAA GAA GAG GAG GAG GGG GAC GAT GAT GCA GCC GCA GCA GCA GTA GCA GCA GCC GCC GCC GCC GCG GCG GCT GCT TCA GCA GCT CCC CTC GCC GCG TCC AGC GGA AGC GCA GGA GGT GGC GGG GGG GGT GGT AGC GGA GGA GGA GGA GGA GGA GGA GGC GGG GGG GGG GGG GGG GGG GTG GTG AGT ACA ATC CTC GTC GTC GTC GTC ATA ATC ATT CTA CTA CTG GCT GTA GTA GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG GTG TAC TAC TAC TAT TAT TAT TAT TCC TCC TCC TCC TCC TCT TCA TCC TCT TCT ACC GCC TCA TCG TGC TGC TGC TGC TGT AGA TGG TGC CAG CTG GTC TAC TTC TTC TTC TTC TTC TTT ATG TTC TTC TTT TTT TTT
Ursus_americanus                 ACA AAA AAA AAG AAA ACA AAA AAT AAT ACG AGC AAA AAA AAA AAA AAG AAG AAG AAG AAG AAG AAT CAC ACA ACA ACC ACC ACA AAC ACA ACC ACG ACT ACT ACA ACT TGC CGC ACT CCG GCC ACA ACC ACG ACA ACA TTG ACC ACG ACT AGT AGA AAT ACC ACC ACT AGC AGT TGC AAC AAG AAA CGA AAA ATA ATC ATC ATC ATC ATC ATC ATT ATC ATT ATT GTG CTG TTT ATG ATG ATG ATG ATG GTG ATT GTT CAC CAT CAC CCC CAA CAA CAA CAG CAA CAG CAG CAG CAG CCG AGT CCA CCC CCC CCT CCG CCG CCT CCA CCC CCG CAG ACG CCA CCT AGA AGG CGC AAA AGG CGA GGG CGA CGA CGG CCC CTA CTC CTC CTG CTT ACA ATG CTC CTG CTC CTT CTG CTA CTC CTG CTG CTG CTG TTG CTC CTG CTT CTT CTC CTA CTG GCG TTA CTC GAA GAA GAA AAC GAA GAC GAC GAC GAC GAC GAT GAA GAA GAA GAG GAG GCG GAC GAC GAT GCA GCC GCC GCG GCG GCA GCT GCA GCC GCC GCC GCC GCT GCT GCC GCT GCG ACA GCC GCT GTC GCT GCG TCC GGC GGA GGC GGA GGA GGT GGT GGA GGG GGC GCC AGT GGA GGA GGA GGA GGC GGT GGT GGC GGA GGA GGA GGG GGG GGG GTG GTG GGC ACC GTC GTC GTC GTC GTC TTA ATA CTC ATC GTA CTG GTG GTG GTC GTG ACC AGT GTC GTG GTC GTA GTG GTG GTG GTG GTG GTG GTG TAC TAC TAT TAC TAT TAT TAT TCC TCA TCC TCC TCC TCT GCA TCA ACC TCT AGC ACG TCA TCG TGC TGC TGT TGT TGC AGG TGG TGT CAG TTC TTC TTC CTC TTC TTC TTC TTT TTT ATG TTC TTT TTC TTT TTT
Ursus_arctos                     ACA AAA AAA AAG AAA ACA AAA AAT AAT ACG AGC AAA AAA AAA AAA AAG AAG AAG AAG AAG AAG AAT CAC ACA ACA ACC ACC ACA AAC ACA ACC ACG ACT ACT ACA ACT TGC CGC ACT CCG GCC ACA ACC ACG ACA ACA TTG ACC ACG ACT AGT AGA AAT ACC ACC ACT AGC AGT TGC AAC AAG AAA CGA AAA ATA ATC ATC ATC ATC ATC ATC ATT ATC ATT ATT GTG CTG TTT ATG ATG ATG ATG ATG GTG ATT GTT CAC CAT CAC CCC CAA CAA CAA CAG CAA CAG CAG CAG CAG CCG AGT CCA CCC CCC CCT CCG CCG CCT CCA CCC CCG CAG ACG CCA CCT AGA AGG CGC AAA AGG CGA GGG CGA CGA CGG CCC CTA CTC CTC CTG CTT ACA ATG CTC CTG CTC CTT CTG CTA CTC CTG CTG CTG CTG TTG CTC CTG CTT CTT CTC CTA CTG GCG TTA CTC GAA GAA GAA AAC GAA GAC GAC GAC GAC GAC GAT GAA GAA GAA GAG GAG GCG GAC GAC GAT GCA GCC GCC GCG GCG GCA GCT GCA GCC GCC GCC GCC GCT GCT GCC GCT GCG ACA GCC GCT GTC GCT GCG TCC GGC GGA GGC GGA GGA GGT GGT GGA GGG GGC GCC AGT GGA GGA GGA GGA GGC GGT GGT GGC GGA GGA GGA GGG GGG GGG GTG GTG GGC ACC GTC GTC GTC GTC GTC TTA ATA CTC ATC GTA CTG GTG GTG GTC GTG ACC AGT GTC GTG GTC GTA GTG GTG GTG GTG GTG GTG GTG TAC TAC TAT TAC TAT TAT TAT TCC TCA TCC TCC TCC TCT GCA TCA ACC TCT AGC ACG TCA TCG TGC TGC TGT TGT TGC AGG TGG TGT CAG TTC TTC TTC TTC TTC TTC TTC TTT TTT ATG TTC TTT TTC TTT TTT
Callorhinus_ursinus              ACA AAA AAA AAA AAA ACA AAA AAT AAT ACA AGC AAA AAA AAA AAG AAA AAG AAG AAG AAG AAG AAT AAT ACA ACA ACG ACT ACA AAC ACA ACC ACG ACT ACT ACA ACT TGC CCC ACT CCG GCC ACA ACT ACA ACA ACT TTG ACG ACA ACT AGT AGA AAT ACC ACC ACT AGC AGC TGC AAG AAG AAA CGA AGA ATA ATC ATC ATC ATC ATC GTC ATC ATC ATT ATT GTG CTG TTT ATG ATG ATG ATG ATG GTG ATC GTT CAC CAT CAT CCC CAA CAA CAA CAG CAA CAG CAG CAG CAG CAG AGT CCA CCC CCC CCT CCG CCG CCT CCA CCA CCG CAG ACG CCA CCT AGA AGG CGC AAA AGG AGA GGG CGA CGA CGG CCC CTA CTC CTC CTG CTT ACA ATG CTC CTG CTC CTT CTG CTA CTC CTG CTG CTG CTG TTG CTC CTG CTT TTT CTT CTA CTG GTG TTA CTC GAA GAA GAA AAC CAA AAC GAC GAC GAC GAC GAT GAA GAA GAA GAG GAG GAG GAC GAC GAT GCA GCT GCC GCA GCA GCG GCT GCA GCC GCC GCC GCC GCT GCT GCT GCT GCG ACA GCC GCT GTC GCT GCG TCC GGC GGA GGG GGA GGT GGT GGT GGA GGG GGT GCC AGT GGA GGA GGA GGA GGC GGT GGT GGC GGA GGG GGG GGG GGG GGG GTG GTG GGC ACA GTC GTC GTC GTC GTC TCA ATA CTC ATC GTA CTG GTG GTG GTT GTG ACC ATC GTC GTC GTC GTA GTG GTG GTG GTG GTG GTG GTG TAC TAC TAT TAC TAC TAT TAT TCG TCA TCC TCC TCT TCT GCA TCA ACC TCT AGC CCG TCA TCA TGC TGC TGT TGT TGT AGA TGG TGT CAG TTT TTC TTC TTC TTC TTC TTC TTT TTT ATG TTC TTT TTC TTT TTT
Heterocephalus_glaber            TCG AAA AAA AAA AAA ATA AAA AAT AAT ACA AGT AAA AAA AAA AAG AAG AGG AAA AAG AAG AAG AAT AAT ACG ACA ACG ACT TTG AAT ACT ACC ACC ACT ACT ACG ACT TGC CAC AAA CCG GCC ACG CCC ACC ACA ACC ACA ACA ACA ACT AGT AGG AAT ACC ACT ACT AGC AGC AGC AAC AAG AGA AGA AGC ATA ATC ATC ATC ATC ATC ATC ATT ATC ATT ATT GTG TTG TTT ACG ATG ATG ATG ATG GTG ATC ATT CAC CAA CAT CCC CAA CAA CAA CAG CAG CAA CAG CAG CAG CAG AGT CCA CCC CCC CCC CCC TGG CCT CCA CCA CCG CAG ATA CCC CCA AGA AGG CGC AAG CAG AGA AGG CGA CGT CGC CCC CTA CTC CTC CTG CTT AAA ATG CTG CTA CTC CTC TTA CTG CTA CTA CTG CTG CTG CTG CTG CTG CTT CTC CTT CTA TTG TTG TTG CTT GAA GAA GAG AGC GAT GAC GAC GAC GAC GAC GAT GAA GAG GAA GAG GAG GGT GAG GAT GAT GCA GCC GCA GCA GCT GCA GCT GCA GCC GCC GCC GCG GCG GCT GCT GCT GCG ACC GCC CCT CTT GCT GCC TCC AGC GGA AGC GCA GGA GGT GGC GGA GAG GGC GGT AGC GGA GGA GGA GGG GGA GGC GGC GGC CGA GGG GGG GGG GGG GGG GTG GTG AGT ACA GTC GTT ATT GCC GTC GTC ATA ATA ATT GTG CTG CTG GTG GTA GTG ATC ATC GTC GTC GTC GTG ACA GTA GTG GTG GTG GTG GTG TAC TAC TAC TAC TAT TAT TAT TCG TCA TCC TCG TCC TCT GCA TCT ACG TCT ACC GGG TCC TCT TGC TGC TGC TGT TGT CGA TGG TAC CAG TTA TTC TTC TTC TAC TTC TTT TTT TTT ATG TTC TTC TTT TTT TTT
Homo_sapiens                     GCA AAA AAG AAA AAA ACA AAA AGT AAT ACA AGC AAA AAA AAA AAC AAA AAG AAA AAG AAG AAC AAT AAT ACA ACA ACG ACG ATG AAC ACA ACC ACC ACT GCT ACA ACT TGC CAC ACT CTG GCC ACA ACT ACG GCA ACA ACG ACC ACA ACT AGT CGG AAT ACC ACC ACT AGC AGC TGC AAC CAG AAA AGA AGT ATC ATC ATC ATC ATT CTC ATC GTC ATT ATT ATT GTG TTG TTT TCA ATG ATG CTG GTG GTG ATC ATT CAC CAT CAC CCC CAA CAA CAA CAG CAA CAA CAG CAG CAG CAG AGT CCG CCC CCC CCT CCG CCA CCT CCA CCA CCG CCG AAA CGG CCT AGA AGG CGC AAA AGG AGA AGG CGA CGA CGG CCC TTA ATC TTC CTG CTT ACG ATG CTC CTC CTC CTT CTA CTA CTC CTG ATG CTG CTG TTG CTT CTG TTT CTC CTT CTA CTG TTG TTA CTT GAA GAA GAA AAC GAA GAC GAC GAT GAC GAC GAC GAA GAA GAA GAG GAG GAG GAC GAT GAT GCA GCT GCA GCA GCA GCA GCT GTA GCC GCC GCG GCC GCG GCG GCT GCT GCG AAA GCC CCT GCT GCT GCG TCC GGC GGA GGC GGA GGA GGT GGT GGA GGG GGA GTT AGC GGA GGA GGG GGA GGA GGG GGT GGC GGA GGG GGG GGG GGG GGG GGG GTA GGT ACA GTC GTC GTC GTC GTC GTC ATA ATA ATA GTA GTG GTG GTG GTA GTA ACG ATC GTC GTC GTC GTA ATG GTA ATA GTG GTG GTG GTG TAC TAT TAC TAC TAT TAC TAT TCG TCA TCC TCC TCC TCT TTA TCG ACG TCT ACC GGG TCA TCC TGC TGC TGT TGC TGT AGA TGG TGT CAG TTG TTC TTC TTC CTC TTC TTC TTT TTC ATG TTC TCC TTT TTG TTT
Lemmus_lemmus                    TCA AAA AAA AAA AAA ACT AAA AAT AAT ACA AAC AAA AAA AAA CAA AAG AGG AAA AAG AAG AAG AAC AAT ACA ACA ACA ACA ATG AAT ACC ACC ACC ACC ACC ACA ACG TGC CAC ACC CCG ACC ACC ACG ATG ACC ACA ACG ACA ACC ACT ACT AGG AAT ACT ACA ACC AGC AGC GGC AAC AAG AAC AGA AGT ATC ATC ATC ATT ATC ATC ATC GTA ATC ATC ATT ATC TTG TTC ATG ATG ATG ATG ATG GTG ATT ATC CAT CAC CAC CCC CAA CAA GAG CAA CAA CAG CAA CAG CAG CAG AGT CCG CCA CCT CCT CCC CCG CCT CCA CTA CCG CAG CCG TTG CCC AGA AGG CGC AAA AGG AGA AGG CGA AAG CGG CCT CTC ATC CTC CTG CTC TCA CCG CTT TTA CTC CTC TTA CTC CTG CTG CTG CTG TTG CTG ATT CTG CTT CTC CTT CTG TTG CTG TTG CTG GAA GAA GAA AGC GAA GAC GAC GAC GAC GAT GAT GAA GAA GAA GAG GAG GGG GAA GAT GAT GCA GCT GCA GCA GCA GCC GCT GCA GCC GCC GCC ACT GCT GCT GCC GCT TCC GCC GCC CCC CTC GCT GCA GCC AGC GGT AGC GCG GGA GGT GGT GGA GGA GGG ACC AGC GGA GGA GGG GGG GGC GGC GGC GGT GGA GGG GGT GGG GGG GGG GTG GTG ACA ACC GTC GTC GTC GTC GTC GTG ATA ATA ATT GTG CTG CTG GCG GTA GTG ACC GTT GTC GTC GTG GTG GTG GTA ATA GTG GTG GTG GTG TAC TAC TAC TAC TAT TAT TAT TCC TCA TCC TCT TCC TCC TCA TCA ACT TCA TCT GGG TCA TCT TGC TGC TGT TGC TGT AGA TGG TGC CAG TTA TTC TAC TTC TTC TTC TTC TTT TTT ATG TTC TTC TTT TTT TTT
Microtus_ochrogaster             TCA AAA AAA AAA AAA ACG AAA AAT AAT ACA AAC AAA AAA AAA CAA AAG AGG AAA AAG AAG AAG AAC AAT ACA ACA ACA ACA ATG AAT ACC ACC ACC ACC ACC ACA ACA TGC CAC ACC CCA ACC ACC ACG TTG ACC ACA ACG ACA ACC ACT ACT AGG AAT ACC ACA ACC AGC AGT GGC AAC AAG AAC AGA ACT ATC ATC ATC ATT ATC ATC ATC ATC ATC ATC ATT ATC TTT TTC ATG ATG ATG ATG ATG GTG ATC ATC CAT CAC CAC CCC CAA CAA CAA CAG CAA CAG CAA CAG CAG CAG AGT CCG CCC CCT CCT CCC CCA CCT CCA CTA CCA CAG CCG TTG CCC AGA AGG CGC AAA AGG AGA AGG CGA AAG CGG CCT CTG ATC CTC CTG CTC TCA CCG CTT TTA CTC CTC TTA CTC CTG CTG CTG CTG CTG CTG ATT CTG CTT CTC CTT CTG TTG CTG TTG CTG GAA GAA GAA AGC GAA GAC GAC GAC GAC GAT GAT GAA GAA GAA GAG GAG GGG GAA GAC GAT GCA GCT GCT GCA GCA GCC GCT GCA GCC GCC GCC ACT GCT GCT GCC GCT TCC ACC GCC CCC TTC GCT GCA GCC AGC GGT AGC GCG GGA GGT GGT GGA GGC GGG ACC AGC GGA GGA GGG GGG GGC GGC GGC GGT GGA GGG GGT GGG GGG GGG GTG GTG ACC ACA GTC GTC GTA GTC GTC GTG ATA ATA ATT GTG CTG CTG GCA GTA GTG ACC GTG GTC GTT GTC GTA GTG GTA ATA GTA GTG GTG GTG TAC TAC TAC TAC TAT TAT TAT TCC TCC TCC TCT TCC TCT TCA TCA ACT TCA TCT GGG TCA TCT TGC TGC TGT TGC TGT AGA TGG TGC CAG TTA TTC TAC TTC TTC TTC TTT TTT TTT ATG TTC TTC TTC TTT TTT
Mus_musculus                     TCA AAA AAA AAA AAA ACA AGA AAT AAT ACC AAC AAA AAA AAA AAA AAA AAG AAG AAG AAG AAG AAC AAT ACA ACA ACT ACG ATG AAC ACC ACC ACC ACC ACC ACA ACG TGC CAA ACC CCG ACC ACA ACA ATG ACC ACA ACG ACA ACA ACT TCT AGG AAT ACC ACA ACC AGC AGC GGC AAC AAG AAC AGA AGT ATC ATC ATC ATC ATC ATC ATC ATC ATT ATC ATT ATC TTG TTC ATG ATG ATG ATG ATG GTG ATT ATC CAT CAT CAT CCA CAA CAA CAA CAG CAG CAG CAA CAG CAG CAG AGC CCA CCC CCT CCT CCC CCG GCT CCA CTG CCG CAG CCA TTG CCC AGA AGG CGC AAA AGG AGA AGA CGA AAA CGC CCT CTG ATC TAC CTG CTT TCA CCG CTT CTG CTC ATG TTA CTC CTG CTA CTG CTA CTG CTG ATT CTG CTT CTC CTT CTG CTG CTG CTC CTC GAA GAA GAG AGC GAA GAT GAC GAC GAC GAC GAT GAA GAA GAA GAG GAG GGG GAA GAT GAT GCA GCC GCG GCC GCA GCC GCC GCA GCC GCC GCT ACT GCG GCT GCC GCT TCA TCC GCC GCC CTC GCC GCA GCC AGC GGT AAC GGG GGG GGT GGT GGA GGG GGG ACC AGC GGA GGA GGG GGG GGA GGC GGC GGC GGA GGA GGT GGG GGG GGG GTG GTG ACA ACA GTC GTC GTC GTC GTC GTC ATA ATA GTT GTG CTG CTG GTG GTA GTG GCT GTT GTC GTC GTC GTA GTG GTG GTT GTA GTA GTG GTG TAC TAC TAC TAC TAT TAC TAT TCC TCC TCC TCT TCC TCT TCA TCA TCA TCA TCT GGG TCA TCT TGC TGC TGT TGC TGT AGA TGG TGT CAG TTA TTC TAC TTC TTC TTT TTC TTT TTT ATG TTC TTT TTT TTT TTT
Mustela_erminea                  GCA AAA AAA AAA AAA ACA AAA AAT AAT ACA AGC AAA AAA AAA AAA AAA AAG AAG AAG AAG AAG AAT AAT ACA ACA ACC ACC ACA AAC ACA ACG ACG ACT ACT ACA ACT TGC CCC ACC CCC GCC ACG ACC ACG ACA ACA CCG ACA ACA ACT AGT AGA AAT ACC ACC ACT AGC AGC TGC AAC AAG AAA CGA AGA ATA ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC GCC CTG TTC ACG ATG ATG ATG ATG GTG ATC ATT CAC CAT CAT CCC CAA CAA CAA CAG CAA CAG CAG CAG CAG CGG AGT CCA CCC CCC CCT CCG CCG CCT CCA CCA CCG CAG AAA CCA CCT AGA CGG CGC AAA AGG AGA GGG CGA CGA CGG CTC CTG CTC TTC CTG CTT ATG GTG CTC CTG CTC CTT CTG CTA CTC CTG CTG CTG CTG TTG CTC CTG CTT CTT CTT CTG CTG GTG TTA TTC GAA GAA GAG AAC GAA GAC GAC GAC GAC GAC GAT GAA GAA GAA GAG GAG GAA GAC GAT GAT GCA GCT GCC GCA GCA GCG GCT GCA GCT GTC GCC GCC GCT GCT GCC GCC GCT ACA GGC CCT GTC GCT GCG TGC GGC GGG GGC GGA GGA GGT GGT GGC GGA GGT GCC AGT GGA GGA GGA GGA GGC GGT GGT GGC GGA GGG GGG GGA GGG GGG GTG GTG GGC ACA GTC GTC GTC GTC GTC TTA ATA CTC GTC GTA CTG GTG GTG GTT GTG ACC ATC GTC GTC GTC GTA GTG GTA GTG GTG GTG GTG GTG TAC TAC TAT TAC TAT TAC TAT TTG TCA TCC TCC TCC TCT TCA TCA ACT TCT AGC ACG TCC TCG TGC TGC TGT TGT TGT AGA TGG TGT CAG TGT TTC TTC TTC TTC TTC TTC TTT TTT ATG TTC TTT TTC TTT TTT
Mustela_putorius_furo            GCG AAA AAA AAA AAA ACA AAA AAT AAT ACA AGC AAA AAA AAG AAA AAG AAG AAG AAG AAG AAG AAT AAT ACA ACA ACC ACC ACA AAC ACA ACG ACG ACT ACT ACA ACT TGC CCC ACC CCC GCC ACG ACC ACG ACA ACA CTG ACA ACA ACT AGT AGA AAT ACC ACC ACT AGC AGC TGC AAC AAG AAA CGA AGA ATA ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC GCC CTG TTC ACA ATG ATG ATG ATG GTG ATC ATT CAC CAT CAT CCC CAA CAA CAA CAG CAA CAG CAG CAG CAG CGG AGT CCA CCC CCC CCT CCG CCG CCT CCA CCA CCG CAG ACA CCA CCT AGA CGG CGC AAA AGG AGA AGG CGA CGA CGG GTC CTG CTC TTC CTG CTT ATG GTG CTC CTG CTC CTT CTG CTA CTC CTG TTG CTG CTG TTG CTC CTG CTT CTT CTT CTG CTG GTG TTA TTC GAA GAA GAA AAC GAA GAC GAC GAC GAC GAC GAT GAA GAA GAA GAG GAG GAA GAC GAT GAT GCA GCT GCC GCA GCA GCG GCT GCA GCT GTC GCC GCC GCT GCT GCC GCC GCT ACA GGC CCT GTC GCT GCG TGC GGC GGG GGC GGA GGA GGT GGT GGC GGA GGT GCC AGT GGA GGA GGA GGA GGC GGT GGT GGC GGA GGG GGG GGA GGG GGG GTG GTG GGC ACA GTC GTC GTC GTC GTC TTA ATA CTC GTC GTA CTG GTG GTG GTT GTG ACC ATC GTC GTC GTC GTA GTG GTA GTG GTG GTG GTG GTG TAC TAC TAT TAC TAT TAC TAT TTG TCA TCC TCC TCC TCT TCA TCA ACT TCT AGC ACG TCC TCG TGC TGC TGT TGT TGC AGA TGG TGT CAG TGT TTC TTC TTC TTC TTC TTC TTT TTT ATG TTC TTT TTC TTT TTT
Myodes_glareolus                 TCA AAA AAA AAA AAA ACG AAA AAT AAT ACG AAC AAA AAA AAA CAA AAG AGG AAA AAG AAG AAG AAC AAT ACA ACA ACA ACA ATG AAT ACC ACC ACC ACC ACC ACA ACG TGC CAC ACC CAG ACC ACC ACG ATG ACC ACA ACG ACA ACC ACA ACT AGG AAT ACC ACA ACC AGC AGC GGC AAC AAG AAC AGA AGT ATC ATC ATC ATT ATC ATC ATC ATC ATC ATC ATT ATC TTG TTC ATG ATG ATG ATG ATG GTG ATT ATC CAT CAC CAC CCC CAA CAA CAA CAG CAA CAG CAA CAG CAG CAG AGT CCG CCA CCT CCC CCC CCA CCT CCA CTA CCG CAG CCG TGG CCC AGA AGG CGC AAA AGG AGA AGG AGA AAG CGG CCT CTG ATC CTC CTG CTC TCA CAG CTT TTA CTC CTC TTA CTC CTG CTG CTG CTG TTG CTG ATT CTG CTT CTC CTT CTG TTG CTG TTG CTG GAA GAG GAA AGC GAA GAC GAC GAC GAC GAT GAT GAA GAA GAA GAG GAG GGA GAA GAC GAC GCA GCT GCA GCA GCA GCC GCT GCA GCC GCC GCC ACT GCT GCT GCC GCG TCT ACC GCC CCC TTC GCT GCA GCC AGC GGT AGC GCG GGA GGT GGT GGA GGG GGG ACC AGC GGA GGA GGG GGG GGC GGC GGC GGT GGA GGG GGT GGG GGG GGG GTG GTG ACC ACA GTC GTC GTT GTC GTC GTG ATA ATA ATT GTG CTG CTG GCG GTA GTG ACC GTG GTC GTC GTT GTA GTG GTA ATA GTA GTG GTG GTG TAC TAC TAC TAC TAT TAT TAT TCC TCA TCC TCT TCC TCT TCA TCA ACT TCC TCT GGG TCA TCT TGC TGT TGT TGC TGT AGA TGG TGC CAG TTA TTC TAC TTC TTC TTC TTC TTT TTT ATG TTC TTC TTC TTT TTT
Neovison_vison                   ACA AAA AAA AAA AAA ACA AAA AAC AAT ACA AGC AAA AAA AAA AAA AAG AAG AAG AAG AAG AAG AAT AAT ACA ACA ACC ACC ACA AAC ACA ACG ACG ACT ACT ACA ACT TGC CCC ACC CCC GCC ACG ACC ACG ACA ACA CTG ACA ACA ACT AGT AGA AAT ACC ACC ACT AGC AGC CGC AAC AAG AAA CGA AGA ATA ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC GCC CTG TTC ATG ATG ATG ATG ATG GTG ATC ATT CAC CAT CAT CCC CAA CAA CAA CAG CAA CAG CAG CAG CAG CGG AGT CCA CCC CCC CCT CCG CCG CCT CCA CCA CCG CAG ACA CCA CCT AGA CGG CGC AAA AGG AGA GGG CGA CGA CGG CTC CTG CTC TTC CTG CTT ATA GTG CTC CTG CTC CTT CTG CTA CTC CTG CTG CTG CTG TTG CTC CTG CTT CTT CTT CTG CTG GTG TTA TTC GAA GAA GAA AAC GAA GAC GAC GAC GAC GAC GAT GAA GAA GAA GAG GAG GAA GAC GAT GAT GCA GCT GCC GCA GCA GCG GCT GCA GCT GTC GCC GCC GCT GCT GCC GCC GCG ACA GGC CCT GTC GCT GCG TGC GGC GGG GGC GGA GGA GGT GGT GGC GGA GGT GCC AGT GGA GGA GGA GGA GGC GGT GGT GGC GGA GGG GGG GGA GGG GGG GTG GTG GGC ACA GTC GTC GTC GTC GTC TTA ATA CTC GTC GTA CTG GTG GTG GTT GTG ACC ATC GTC GTC GTC GTA GTG GTA GTG GTG GTG GTG GTG TAC TAC TAT TAC TAT TAC TAT TTG TCA TCC TCC TCC TCT TCA TCA ACC TCT AGC ACG TCC TCG TGC TGC TGT TGT TGC AGA TGG TGT CAG TTT TTC TTC TTC TTC TTC TTC TTT TTT ATG TTC TTT TTC TTT TTT
Ochotona_princeps                GGG AAA AAA AAA AAA GAC GAA AAT AAT ACA AGC AAA AAG AAA GAC AAG AAG AAA AAG AAG AAG AAC AAT ACA ACA ACA ACG TTA AAT ACC ACC ACC ACT ACA ACA ACT AGC CCC ACT ACC GCC ACG ACG ACG ACA ACG ACT ACT ACA ACT AGC AGA AAT ACC ACC ACT AGC AGC TGT AAT AAG AGA AGA AGC ATC ATC ATT ATC ATC ATC ATC ATC ATC ATC ATC GTG TTG TTT ATG ATG ATG ATG ATG GTG ATT ATT CAC CAC CAT CCC CAG CAG CAA CAG CAA AAG CAG CAG CAG CAG AGT CCA CCC CCC CCT CCC CCG CCT CAA CCC CCG CAG ACA CCG CCT AGG AGG CGC AAA AGG CGA AGG CGA CGT CGC CCT CTA CTC TTA CTG CTG TCC CTG CTA CTG CTC CTC CTA CTA CTC CTG CTG CTG CTG CTG CTC CTG CTT CTC CTT CTC CTG CTG CAG CTC GAG GAA GAA AGC GTT GAC GAC GAC GAT GAC GAT GAA GAA GAG GAG GAG GGG GAC GAT GAT GCA GCT GCA GCG GCC GCC GCT GCA GCC GCA GCC GCC GCC GCT GCT GCG GCG TCA GCC TCT CTT GCT GCG TCC AGC GGA GGC GCC GGT GGT GGC GGC GAG GGT GGC AGC GGA TTA GGA GGA GGA GGC GGT GGC GGA GGG GGG GGG GGG GGG GTG GTG ACT ACC GTC GTC ATT GTT GTC GTT ATA ATA ATT GCA CTG CTG GTG GTA GTG ACC ATT GTC GTG GTT GTG GTG GTG GTG GTG GTG GTG GTG TAC TAC TAC TAC TAC TAC TAC ACG TCC TCG TCC ACC TCT TGT TCG ACA TCG GGA GGG TCA TCT TGC TGC TGT TGC TGT AGA TGG TGT CAG TTG TTC TTC TTC TGG TTT TTT TTT TTT ATG TTC TTC TTT TTT TTT
Oryctolagus_cuniculus            TCG AAA AAA AAA AAA ACA GAA AAT AAC ACA AGC AAA AAA AAG GAA AAA AAG AAA AAG AGG AAG AAC AAT ACA ACA ACC ACG TTA AAC ACA ACC ACC ACG ACC ACG ACA TGC CCC ACT ACC GCC ACG ACT ACA ACA ACG ACG ACT ACA ACT AGT AGA AAT ACC ACC ACT AGC AGC TTC AAC AAG AGA AGA AGC ATC ATC ATT ATT ATC ATC ATC ATC ATC ATC ATC GTG TTG TTT ATG ATG ATG ATG ATG GTG ATC ATT CAC CAC CAC CCC CAA CAA CAA CAG CAG AAG CAG CAG CAG CAG AGT CCA CCC CCC CCC CCA CCA CCT CCG CCA CCG CCG GCG CCC CCT AGG AGG CGC AAA AGG AGG AGG CGA GGA CGG CCT CTA CTC TTC CTG CTG ACC CTG CAA CTG CTC CTG CTA CTA CTC CTG CTG CTG CTG CTG CTC TTG CTT CTC CTT CTC CTC CTG TTA CTC GAG GAA GAA AAC GAA GAC GAC GAC GAT GAC GAC GAA GAA GAG GAG GAG GGG GAC GAT GAT GCA GCT GCA GCG GCG GCT GCT GCA GCC GCC GCC ACC GCC GCC GCT GCT GCA ACA GCC CCG CTT GCC GCG TCC AGC GGC GGC GGA GGG GGT GGC GGA GGG GGT GGC AGC GGA GGA GGA GGA GGA GGC GGC GGC GGA GGG GGG GGG GGG GGG GTG GTG AGT ACC GTC GTC GTC GTC GTC GTT ATA ATA ATT GTA CTG GTG GTG GTA GTG ATC ATC GTC GTG GTC GTG GTG GTG GTG GTG GTG GTG GTG TAC TAC TAC TAT TAC TAC TAC ACG TCA TCA TCC ACC TCT TCG TCA ACG TCG ACC GGG TCA TCT TGC TGC TGT TGC TGT AGG TGG TGT CAA TTC TTC TTC TTC TTC TTC TTT TTC TTT ATG TTC TTC TTT TTT TTT
Phoca_vitulina                   ACA AAA AAA AAA AAA ACA AAA AAT AAT ACA AGC AAA AAA AAA AAA AAA AAG AAG AAG AAG AAG AAT AAC ACA ACA ACG ACT ACA AAC ACA ACC ACG ACT ACT ACA ACT TGC CCC ACT CCG GCC ACA ACC ACG ACA ACT TTG ACG ACA ACT GGT AGA AAT ACC ACC ACT AGC AGC TGC AAG AAG AAA CGA AGA ATA ATC ATC ATC ATC ATC GTC ATC ATC ATT ATT GTG CTG TTT ATG ATG ATG ATG ATG GTG ATC GTT CAC CAC CAT CCC CAA CAA CAA CAG CAA CAG CTG CAG CAG CAG AGT CCA CCC CCC CCT CCG CCG CCT CCA CCA CCG CAG ACG CCA CCT AGA AGG CGC AAA AGG AGA GGG CGA CGA CGG CCC CTA CTC CTC CTG CTT ACA ATG CTC CTG CTC CTT CTG CTA CTC CTG CTG CTG CTG TTG CTC CTG CTT CTT CTT CTA CTG GTG TTA CTC GAA GAA GAA AAC GAA AAC GAC GAC GAC GAC GAT GAA GAA GAA GAG GAG GAG GAC GAC GAT GCA GCT GCC GCA GCA GCG GCT GCA GCC GCC GCC GCC GCT GCT GCT GCT GCG ACA GCC GCT GTC GCT GCG TCC GGC GGA GGC GGA GGT GGT GGT GGA GGG GGT GCC AGT GGA GGC GGA GGA GGC GGT GGT GGC GGA GGG GGG GGG GGG GGG GCG GTG GGC ACA GTC GTC GTC GTC GTC TTA ATA CTC ATC GTA CTG GTG GTG GTT GTG ACC ATC GTT GTC GTC GTA GTG GTA GTG GTG GTG GTG GTG TAC TAC TAT TAC TAC TAC TAT TCG TCA TCC TCC TCC TCT GCA TCA ACC TCT AGC CCG TCA TCG TGC TGC TGT TGT TGT AGA TGG TGT CAG TTC TTC TTC TTC TTC TTC TTC TTT TTT ATG TTC TTT TTC TTT TTT
Rattus_norvegicus                TCA AAA AAA AAA AAA ACG AGA AAT AAC ACC AGC AAA AAA AAA CAC AAG AAG AAG AAG AAG AAG AAC AAT ACA ACA ACC ACT ATG AAC ACC ACC ACC ACC ACC ACA ACG TGC CAA ACC TCG ACC ACA ACA ATG ACC ACA GCA ACA ACA ACG TCT AGG AAT ACC ACG ACT AGC AGC GGC CAC AAG AAC AGA AGT ATC ATC ATC ATC ATC ATC ATC ATC ATT ATC ATT ATC TTG TTC ATG ATG ATG ATG ATG GTG ATT ATC CAT CAT CAC CCC CAA CAA CAA CAG CAG CAG CAA CAA CAG CAG AGT CCG CCC CCC CCT CCC CCG CCT CCA CTA CCG CAG CCA TTG CCC AGA AGG CGC AAG AGG AGA CGG CGA AAA CGC CCT CTG ATC TAC CTG CTG TCA CCG CTT CTG CTC ATG TTG CTC CTG CTA CTG TTA CTG CTG ATC CTG CTT CTC CTT CTG CTG CTA TTG CTC GAA GAA GAG AGC GAA GAC GAC GAC GAC GAT GAC GAA GAA GAA GAG GAG GGG GAA GAT GAT GCA GCC GCA GCA GCG GCC GCC GCC GCT GCC GCC ACT GCT GCT GCC GCT TCT ACC GCC GCC CTC GCT GCA GCC AGC GGC AGT GGA GGG GGT GGT GGA GGG GGG ACT AGC GGT GGA GGG GGG GGC GGC GGC GGC GGA GGA GGT GGG GGG GGG GTG GTG ACA ACA GTC GTC GTC GTC GTC GTC ATA ATA GTT GCG CTG CTG GTG GTG GTG GCT GTC GTC GTC GTG GTA GTG GTA GTT GTA GTG GTG GTG TAC TAC TAC TAC TAT TAC TAT TCC TCC TCC TCT TCC TCT TCG TCA ACG TCC TCT GGG TCA TCT TGC TGC TGT TGC TGT AGA TGG TGC CAG TTA TTC TAC TTC TTC TTT TTC TTT TTT ATG TTC TTT TTT TTT TTT
Sorex_araneus                    GTC AAA AAA AAA AAA ACC AAA AAC AAT ACC AAC AAA AAA AAG AAC AAG AAG AAG AAG AAG AAG AAC AAC ACG ACA ACC ACG ACA ACC ACC ACC ACC ACG ACG GCA ACA TGC CAC AGG CAC AGC ACG ACC ATG ACG ACA TCG ACG ACC ACC ACC AGG AAC GCC ACT AGT AGC AGC AGC AAC AGG AAG AGG CCT ATC ATC ATC ATC ATC ATC ATC GTG ATC ATC ATT ATC CTC TTC GCC ATG CTC ATG ATG GTG ATC ATC CAC AAA CAC CAC CAG CAG CAA CAG CAG CAG CAG CAG CAG CAG AGC CCC CCT CCC CCC CCC CCC CCC CCG CCG CCG CCC CCG CCC CCC AGG CGC CGT AAG AAG AGG AGG CGG AAA CGG CTC CTA TTC CTC CTG CTG CTT CTG CTG CTG CTC ATG CTC GTC CTC CTG CTG CTG CTG CTG ATC CTC CTG CTC CTG CTG CTT GTG TTA CTG GAA GAG GAA AGC GAG GAC GAC GAC GAC GAC GAC GAA GAA GAG GAA GAG GAG GAC GAT GAT GCA GCC GCC GCA GCG GTG GCT GCC GCC GCC GCC GCC GCG GCC GCT GCG TCC AAC GCC GCA GCG GCT GCT TCT GGC GGT GCC GGG GGA GGG GGA GGC CAC TGG GGC GGG GGC GGG GGA GGG GGG GGC GGC GGC GGC GGA GGG GGG GGG GGG GTG GTG GGG GTA ATG GTC GTC GTG GTC GTG ATC CTG GTG GTG GTG GTG GTG GTG GTG AAC GTG GTC ATG GTG GTG GTG GTT GTG GTG GTG ATG GCC TAC TAC TAC TAC TAC TAC TAC GAC TCC TCC TCC GCC TCC ATG TCG ACG TCG GAC CCC TCC TCT TGC TGC TGC TGC TGT TAC TGG TGC CAC TTC TTC TAC CTC TTC TTC TTC TAC TTC CTC TTC TCT TTC TTT TTT
Talpa_europaea                   TCG AAA AAA AAA AAG GGC ACG AAT AAC ACC AGC AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAT AAC ACA ACA ACC ACC ACA ACC ACC ACC ACC ACC ACC ACC ACC TGC GCC CAC TCC GCC ACG ACG ACG ACG ACG TCG ACG ACG ACT ACT AGG AAC ACC ACC AGT AGC AGC ACC AAC AAG AAG AGA AGT ATC ATC ATC ATC ATC ATC ATC ATT ATC ATC ATC GTG TTC TTC ATG ATG ATG ATG ATG GTG ATC ATC CAC CAC CAC CAC CAA CAG CAA CAG CAG CGG CAG CAG CAG CAG CAC CCG CCC CCC CCC CCC CTG CCG CCG CCC CCG CCG CCG CCC CCC AGG AGG CGC AAG AGG AGG AGG CGG CGC CGG CTC CTA CTC CTG CTG CTT CTG ATG CTC CTG CTC ATG CTG CTG CTC CTG CTG CTG CTG CTG ATC CTG CTT CTG CTC CTG CTG ACC CTG CTG GAA GAG GAG AGC GAC GAC GAC GAC GAC GAC GAT GAA GAG GAA GAG GAG GAG GAC GAT GAC GCA GCA GCG GCC GCC GCC GCT ATC GCC GCC GCC GCC GCG GCT GCT GCT GCA GCC GCC CCC GCG GCA GCG GCT GGC GGC GCC GGC GGC GGC GGC GGA GGC GGC GGC AGC GGC GGA GGG GGA GGG GGC GGC GGC GGG GGG GGG GGG GGC GGG GTC CAG GGG ATG ATC GTC GTG GTC GTC GTC ATA GTG GTC GTG CTG GTG GTG GTG GTG ATC GTC GTC GTG GTG GTG GTG GTG CTG GTG GTG GTG GCG TAC TAC TAC TAC TAT TAC TAT CCG TCC TCC TCC TCC TCT TCC TCG TCC TCT AGC CCC TCT TCC TGC TGC TGC TGC TGC AGA TGG TGT CAG GTC GTC TTC TTC TTC TTC TTC TTC TTC CTG TTC TTC TTT TTC TTT
Talpa_occidentalis               TCG AAA AAA AAA AAG GGC ACG AAT AAC ACC AGC AAA AAG AAG AAG AAG AAG AAG AAG AAG AAG AAT AAC ACA ACA ACC ACC ACA ACC ACC ACC ACC ACC ACC ACC ACC TGC GCC CAC TCC GCC ACG ACG ACG ACG ACG TCG ACG ACG ACT ACT AGG AAC ACC ACC AGT AGC AGC ACC AAC AAG AAG AGA AGT ATC ATC ATC ATC ATC ATC ATC ATT ATC ATC ATC GTG TTC TTC ATG ATG ATG ATG ATG GTG ATC ATC CAC CAC CAC CAC CAA CAG CAA CAG CAG CGG CAG CAG CAG CAG CAC CCG CCC CCC CCC CCC CTG CCG CCG CCC CCT CCG CCG CCC CCC AGG AGG CGC AAG AGG AGG AGG CGG CGC CGG CTC CTA CTC CTG CTG CTT CTG ATG CTC CTG CTC ATG CTG CTG CTC CTG CTG CTG CTG CTG ATC CTG CTT CTG CTC CTG CTG ACC CTG CTG GAA GAG GAG AGC GAC GAC GAC GAC GAC GAC GAT GAA GAG GAA GAG GAG GAG GAC GAT GAC GCA GCA GCG GCC GCC GCC GCT ATC GCC GCC GCC GCC GCG GCT GCT GCT GCG GCC GCC CCC GCG GCA GCG GCT GGC GGC GCC GGC GGC GGC GGC GGA GGC GGC GGC AGC GGC GGA GGG GGG GGG GGC GGC GGC GGG GGG GGG GGG GGC GGG GTC CAG GGG ATG ATC GTC GTG GTC GTC GTC ATA GTG GTC GTG CTG GTG GTG GTG GTG ATC GTC GTC GTG GTG GTG GTG GTG CTG GTG GTG GTG GCG TAC TAC TAC TAC TAT TAC TAT CCA TCC TCC TCC TCC TCT TCC TCG TCC TCT AGC CCC TCC TCC TGC TGC TGC TGC TGC AGA TGG TGT CAG GTC TTC TTC TTC TTC TTC TTC TTC TTC CTG TTC TTC TTT TTC TTT



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CODONML (in paml version 4.10.10, 29 Jan 2026)  /data/dormanomics_validation/ucp1/work/leave_bats/occupancy80.phy
Model: several dN/dS ratios for branches, 
Codon frequency model: F3x4
ns =  25  ls = 306

Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT   5   5   5   5   5   5 | Ser TCT   4   3   3   3   4   3 | Tyr TAT   0   4   4   4   4   4 | Cys TGT   1   1   1   1   1   1
    TTC  10  11  11  11  11  10 |     TCC   5   7   7   7   6   7 |     TAC   8   4   5   4   4   5 |     TGC   5   5   5   5   5   5
Leu TTA   0   0   0   0   0   0 |     TCA   1   4   4   4   4   4 | *** TAA   0   0   0   0   0   0 | *** TGA   0   0   0   0   0   0
    TTG   1   5   7   7   7   7 |     TCG   4   2   2   2   2   2 |     TAG   0   0   0   0   0   0 | Trp TGG   3   2   2   2   2   2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT   1   3   4   4   5   3 | Pro CCT   3   5   4   4   5   5 | His CAT   1   0   0   0   1   1 | Arg CGT   0   0   0   0   0   0
    CTC   6   7   5   5   4   7 |     CCC   6   7   6   6   6   6 |     CAC   4   5   4   5   4   4 |     CGC   3   1   1   1   1   1
    CTA   0   4   3   3   3   5 |     CCA   1   1   2   2   2   2 | Gln CAA   0   4   4   4   4   4 |     CGA   0   2   2   2   2   2
    CTG  23  14  12  12  12  11 |     CCG   4   4   5   5   4   4 |     CAG  10   8   8   8   8   8 |     CGG   7   1   1   1   1   1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT   2   5   5   5   5   5 | Thr ACT   4   4   4   4   4   3 | Asn AAT   2   3   5   4   4   3 | Ser AGT   1   1   4   4   4   2
    ATC  14  11  10  10  10  10 |     ACC  13  12  12  12  12  13 |     AAC   4   4   3   4   4   5 |     AGC   7  10   7   7   7   9
    ATA   0   1   2   2   2   2 |     ACA   5  11  11  11  11  11 | Lys AAA   6  10  10  10  10  10 | Arg AGA   1   5   5   5   5   5
Met ATG   7   8   8   8   8   8 |     ACG   6   2   1   1   1   1 |     AAG  10   5   6   6   6   5 |     AGG   4   5   5   5   5   5
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT   0   0   0   0   0   0 | Ala GCT   5   4   4   4   4   4 | Asp GAT   3   6   5   5   5   5 | Gly GGT   1   2   2   2   2   3
    GTC   6   9  11  11  11   9 |     GCC  15   8   7   7   7   8 |     GAC   8   4   4   4   4   4 |     GGC   9   3   3   3   3   2
    GTA   1   2   2   2   2   3 |     GCA   2   7   7   7   7   8 | Glu GAA   3   6   6   6   6   6 |     GGA   2  10   9   9   9   9
    GTG  22  13  13  13  13  13 |     GCG   2   3   4   4   4   3 |     GAG   7   4   4   4   4   4 |     GGG  17   9  10  10  10   9
--------------------------------------------------------------------------------------------------------------------------------------

--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT   6   6   8   7   5   5 | Ser TCT   2   2   3   4   2   3 | Tyr TAT   4   4   3   3   3   3 | Cys TGT   3   3   4   2   3   2
    TTC   8   9   8   6   8   8 |     TCC   5   5   3   4   6   5 |     TAC   4   4   5   7   5   6 |     TGC   5   5   4   4   5   5
Leu TTA   2   2   1   2   3   3 |     TCA   3   3   5   1   3   7 | *** TAA   0   0   0   0   0   0 | *** TGA   0   0   0   0   0   0
    TTG   2   2   2   5   5   5 |     TCG   1   1   1   3   2   0 |     TAG   0   0   0   0   0   0 | Trp TGG   2   2   2   3   2   2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT   4   4   4   5   5   3 | Pro CCT   3   3   3   2   4   4 | His CAT   1   1   2   1   1   1 | Arg CGT   0   0   0   1   0   0
    CTC  10   9   8   5   7   8 |     CCC   5   5   5   8   4   4 |     CAC   3   3   1   2   3   3 |     CGC   2   2   1   2   1   1
    CTA   3   3   3   5   3   1 |     CCA   3   3   4   4   3   2 | Gln CAA   4   4   5   5   5   6 |     CGA   4   4   3   3   2   1
    CTG  11  11  11  11   8  12 |     CCG   5   5   5   2   4   6 |     CAG   7   7   8   9   7   6 |     CGG   1   1   1   0   3   1
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT   4   4   2   6   5   5 | Thr ACT   6   6   9   8   6   6 | Asn AAT   4   4   5   6   4   5 | Ser AGT   5   5   3   4   4   2
    ATC   8   8  10  10   8  11 |     ACC  10  10   5   7   6  14 |     AAC   3   3   3   1   5   4 |     AGC   3   3   4   8   4   6
    ATA   2   2   2   5   4   3 |     ACA  12  12  15   8  10  10 | Lys AAA  11  11  11  11  13  10 | Arg AGA   2   2   5   4   4   4
Met ATG   8   8   8   7   8   9 |     ACG   6   6   4   6   7   3 |     AAG   8   8   8   7   4   6 |     AGG   3   3   2   4   3   5
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT   1   1   2   1   1   1 | Ala GCT   6   6   8   6   7   6 | Asp GAT   2   2   2   4   3   4 | Gly GGT   4   4   6   3   4   5
    GTC   9   9  10   6  10   7 |     GCC  10  10   8   8   5   8 |     GAC   7   7   6   5   6   4 |     GGC   6   6   4   5   3   4
    GTA   2   2   2   2   7   3 |     GCA   4   4   5   7   7   6 | Glu GAA   7   7   6   4   7   8 |     GGA  11  11   8   7  10   6
    GTG  15  15  15  13  10  13 |     GCG   6   6   3   3   5   2 |     GAG   3   3   4   7   4   4 |     GGG   5   5   8   7  10   9
--------------------------------------------------------------------------------------------------------------------------------------

--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT   6   7   5   5   4   6 | Ser TCT   4   5   2   2   5   2 | Tyr TAT   3   2   3   3   3   3 | Cys TGT   2   3   5   4   3   3
    TTC   9   6  11  11  10  11 |     TCC   5   5   4   4   4   4 |     TAC   6   8   5   5   6   5 |     TGC   5   4   5   6   4   5
Leu TTA   3   2   2   2   3   2 |     TCA   6   8   3   3   6   3 | *** TAA   0   0   0   0   0   0 | *** TGA   0   0   0   0   0   0
    TTG   4   2   2   3   4   2 |     TCG   0   0   1   1   0   1 |     TAG   0   0   0   0   0   0 | Trp TGG   2   2   2   2   3   2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT   3   4   5   5   3   5 | Pro CCT   4   3   4   4   3   4 | His CAT   1   3   2   2   1   2 | Arg CGT   0   0   0   0   0   0
    CTC   6   6   7   6   6   7 |     CCC   5   3   5   5   5   5 |     CAC   3   0   1   1   3   1 |     CGC   1   2   1   1   1   2
    CTA   1   2   1   1   1   1 |     CCA   4   4   4   4   3   4 | Gln CAA   6   5   4   4   6   4 |     CGA   1   1   3   3   0   3
    CTG  14  14  13  13  13  14 |     CCG   3   4   4   3   3   3 |     CAG   7   8   7   7   9   7 |     CGG   1   0   3   3   1   3
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT   4   4   2   2   5   2 | Thr ACT   5   3   6   6   3   5 | Asn AAT   5   4   5   5   5   4 | Ser AGT   2   1   3   3   2   3
    ATC  13  12  11  11  12  11 |     ACC  16  12   7   7  16   8 |     AAC   4   6   3   3   4   4 |     AGC   5   6   4   4   6   4
    ATA   3   2   2   2   3   3 |     ACA  11  12  13  15  10  15 | Lys AAA  10  11  13  10  10  11 | Arg AGA   4   6   5   5   5   5
Met ATG   8  10   7   7   9   7 |     ACG   3   3   6   5   5   5 |     AAG   6   6   6   8   6   7 |     AGG   5   3   1   2   5   1
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT   1   3   1   1   2   1 | Ala GCT   7   5   7   7   5   6 | Asp GAT   3   4   3   3   2   3 | Gly GGT   5   4   5   5   5   5
    GTC   6   9  11  12   6  11 |     GCC   7  11   8   8   7   8 |     GAC   5   4   6   6   6   6 |     GGC   5   4   7   7   4   7
    GTA   5   4   3   3   4   3 |     GCA   6   4   5   4   6   4 | Glu GAA   8   7   7   8   7   8 |     GGA   5   6   9   9   6   9
    GTG  11  10  14  14  11  14 |     GCG   1   2   2   3   3   3 |     GAG   3   4   4   3   4   3 |     GGG   9  11   6   5   9   6
--------------------------------------------------------------------------------------------------------------------------------------

--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT   8   6   6   7   2   2 | Ser TCT   3   2   2   6   3   3 | Tyr TAT   0   1   2   2   0   2 | Cys TGT   5   3   4   2   1   1
    TTC   5  11   9   6  10  12 |     TCC   4   2   4   5   6   8 |     TAC   8   7   6   8  11   6 |     TGC   3   4   4   5   6   6
Leu TTA   3   2   2   2   1   0 |     TCA   2   4   3   4   0   0 | *** TAA   0   0   0   0   0   0 | *** TGA   0   0   0   0   0   0
    TTG   2   2   2   4   0   0 |     TCG   3   3   2   2   3   3 |     TAG   0   0   0   0   0   0 | Trp TGG   3   2   2   2   3   2
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT   3   3   5   3   2   2 | Pro CCT   4   3   3   3   2   0 | His CAT   1   0   1   2   0   0 | Arg CGT   1   0   0   0   1   0
    CTC   8   8   8   5  11   6 |     CCC   6   6   5   5  10   9 |     CAC   2   3   2   3   7   6 |     CGC   2   1   1   2   1   2
    CTA   4   3   3   3   1   1 |     CCA   1   4   4   2   0   0 | Gln CAA   3   5   4   6   1   2 |     CGA   2   1   3   1   0   0
    CTG  14  12  12  13  15  21 |     CCG   3   4   5   4   4   7 |     CAG  10   6   7   7   9   9 |     CGG   0   1   1   1   2   3
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT   6   4   2   3   1   1 | Thr ACT   8   5   8   4   1   2 | Asn AAT   6   3   4   3   1   2 | Ser AGT   1   3   2   3   1   2
    ATC  10  12  10  13  14  16 |     ACC   9  12   6  12  11  15 |     AAC   1   5   4   4   9   4 |     AGC   9   6   4   6   6   6
    ATA   2   2   2   2   0   1 |     ACA  10  10  14  10   4   3 | Lys AAA   8   9  12   8   9   4 | Arg AGA   4   3   5   5   0   2
Met ATG   7   7   8  10  10   9 |     ACG   6   8   5   5   8   8 |     AAG   8   6   7   8  10  13 |     AGG   4   7   2   3   7   6
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT   4   1   3   2   1   0 | Ala GCT   5   5   8   6   4   5 | Asp GAT   4   3   2   3   2   2 | Gly GGT   4   2   7   4   1   0
    GTC   4   7   9   9   6  10 |     GCC   9   8   8  10  14  12 |     GAC   7   6   6   5   9   8 |     GGC   6   7   6   6   8  15
    GTA   1   2   3   3   1   0 |     GCA   5   4   5   5   4   4 | Glu GAA   5   7   7   7   5   3 |     GGA   7   9   7   5   4   3
    GTG  15  16  13  11  22  17 |     GCG   4   4   4   2   4   5 |     GAG   6   5   4   4   6   7 |     GGG   8   9   7  10  11   8
--------------------------------------------------------------------------------------------------------------------------------------

------------------------------------------------------
Phe TTT   2 | Ser TCT   2 | Tyr TAT   2 | Cys TGT   1
    TTC  13 |     TCC   9 |     TAC   6 |     TGC   6
Leu TTA   0 |     TCA   0 | *** TAA   0 | *** TGA   0
    TTG   0 |     TCG   3 |     TAG   0 | Trp TGG   2
------------------------------------------------------
Leu CTT   2 | Pro CCT   1 | His CAT   0 | Arg CGT   0
    CTC   6 |     CCC   9 |     CAC   6 |     CGC   2
    CTA   1 |     CCA   1 | Gln CAA   2 |     CGA   0
    CTG  21 |     CCG   5 |     CAG   9 |     CGG   3
------------------------------------------------------
Ile ATT   1 | Thr ACT   2 | Asn AAT   2 | Ser AGT   2
    ATC  16 |     ACC  15 |     AAC   4 |     AGC   6
    ATA   1 |     ACA   3 | Lys AAA   4 | Arg AGA   2
Met ATG   9 |     ACG   8 |     AAG  13 |     AGG   6
------------------------------------------------------
Val GTT   0 | Ala GCT   5 | Asp GAT   2 | Gly GGT   0
    GTC   9 |     GCC  12 |     GAC   8 |     GGC  15
    GTA   0 |     GCA   3 | Glu GAA   3 |     GGA   2
    GTG  17 |     GCG   6 |     GAG   7 |     GGG   9
------------------------------------------------------

Codon position x base (3x4) table for each sequence.

#1: Erinaceus_europaeus
position  1:    T:0.15410    C:0.22623    A:0.28197    G:0.33770
position  2:    T:0.32131    C:0.26230    A:0.21639    G:0.20000
position  3:    T:0.10820    C:0.40328    A:0.07213    G:0.41639
Average         T:0.19454    C:0.29727    A:0.19016    G:0.31803

#2: Ictidomys_tridecemlineatus
position  1:    T:0.17320    C:0.21569    A:0.31699    G:0.29412
position  2:    T:0.32026    C:0.27451    A:0.21895    G:0.18627
position  3:    T:0.15033    C:0.35294    A:0.21895    G:0.27778
Average         T:0.21460    C:0.28105    A:0.25163    G:0.25272

#3: Marmota_flaviventris
position  1:    T:0.18301    C:0.19935    A:0.32026    G:0.29739
position  2:    T:0.32026    C:0.27124    A:0.22222    G:0.18627
position  3:    T:0.16340    C:0.33007    A:0.21895    G:0.28758
Average         T:0.22222    C:0.26688    A:0.25381    G:0.25708

#4: Marmota_marmota
position  1:    T:0.17974    C:0.20261    A:0.32026    G:0.29739
position  2:    T:0.32026    C:0.27124    A:0.22222    G:0.18627
position  3:    T:0.16013    C:0.33333    A:0.21895    G:0.28758
Average         T:0.22004    C:0.26906    A:0.25381    G:0.25708

#5: Marmota_monax  
position  1:    T:0.17974    C:0.20261    A:0.32026    G:0.29739
position  2:    T:0.32026    C:0.27124    A:0.22222    G:0.18627
position  3:    T:0.17320    C:0.32353    A:0.21895    G:0.28431
Average         T:0.22440    C:0.26580    A:0.25381    G:0.25599

#6: Urocitellus_parryii
position  1:    T:0.17974    C:0.20915    A:0.31699    G:0.29412
position  2:    T:0.32026    C:0.27451    A:0.22222    G:0.18301
position  3:    T:0.15359    C:0.34314    A:0.23203    G:0.27124
Average         T:0.21786    C:0.27560    A:0.25708    G:0.24946

#7: Ursus_americanus
position  1:    T:0.15359    C:0.21569    A:0.31046    G:0.32026
position  2:    T:0.31046    C:0.28431    A:0.22222    G:0.18301
position  3:    T:0.17974    C:0.32026    A:0.22876    G:0.27124
Average         T:0.21460    C:0.27342    A:0.25381    G:0.25817

#8: Ursus_arctos   
position  1:    T:0.15686    C:0.21242    A:0.31046    G:0.32026
position  2:    T:0.31046    C:0.28431    A:0.22222    G:0.18301
position  3:    T:0.17974    C:0.32026    A:0.22876    G:0.27124
Average         T:0.21569    C:0.27233    A:0.25381    G:0.25817

#9: Callorhinus_ursinus
position  1:    T:0.16013    C:0.20915    A:0.31373    G:0.31699
position  2:    T:0.31373    C:0.28105    A:0.22549    G:0.17974
position  3:    T:0.20915    C:0.27778    A:0.24510    G:0.26797
Average         T:0.22767    C:0.25599    A:0.26144    G:0.25490

#10: Heterocephalus_glaber
position  1:    T:0.16667    C:0.21242    A:0.33333    G:0.28758
position  2:    T:0.31373    C:0.26471    A:0.23529    G:0.18627
position  3:    T:0.20588    C:0.28758    A:0.22222    G:0.28431
Average         T:0.22876    C:0.25490    A:0.26362    G:0.25272

#11: Homo_sapiens   
position  1:    T:0.16993    C:0.19608    A:0.31046    G:0.32353
position  2:    T:0.31699    C:0.26471    A:0.22876    G:0.18954
position  3:    T:0.18627    C:0.28105    A:0.26471    G:0.26797
Average         T:0.22440    C:0.24728    A:0.26797    G:0.26035

#12: Lemmus_lemmus  
position  1:    T:0.17647    C:0.19281    A:0.33660    G:0.29412
position  2:    T:0.31699    C:0.28105    A:0.22876    G:0.17320
position  3:    T:0.17974    C:0.32026    A:0.22876    G:0.27124
Average         T:0.22440    C:0.26471    A:0.26471    G:0.24619

#13: Microtus_ochrogaster
position  1:    T:0.17974    C:0.19608    A:0.33987    G:0.28431
position  2:    T:0.31699    C:0.28431    A:0.22876    G:0.16993
position  3:    T:0.17974    C:0.33007    A:0.23856    G:0.25163
Average         T:0.22549    C:0.27015    A:0.26906    G:0.23529

#14: Mus_musculus   
position  1:    T:0.17647    C:0.19281    A:0.33007    G:0.30065
position  2:    T:0.31699    C:0.27451    A:0.23529    G:0.17320
position  3:    T:0.17974    C:0.32026    A:0.24183    G:0.25817
Average         T:0.22440    C:0.26253    A:0.26906    G:0.24401

#15: Mustela_erminea
position  1:    T:0.16340    C:0.20915    A:0.30719    G:0.32026
position  2:    T:0.31699    C:0.26471    A:0.22549    G:0.19281
position  3:    T:0.18954    C:0.31373    A:0.24183    G:0.25490
Average         T:0.22331    C:0.26253    A:0.25817    G:0.25599

#16: Mustela_putorius_furo
position  1:    T:0.16667    C:0.20261    A:0.31046    G:0.32026
position  2:    T:0.32026    C:0.26471    A:0.22222    G:0.19281
position  3:    T:0.18627    C:0.31699    A:0.23856    G:0.25817
Average         T:0.22440    C:0.26144    A:0.25708    G:0.25708

#17: Myodes_glareolus
position  1:    T:0.17974    C:0.18954    A:0.34641    G:0.28431
position  2:    T:0.31373    C:0.27451    A:0.23529    G:0.17647
position  3:    T:0.16667    C:0.32680    A:0.22876    G:0.27778
Average         T:0.22004    C:0.26362    A:0.27015    G:0.24619

#18: Neovison_vison 
position  1:    T:0.16013    C:0.21242    A:0.31046    G:0.31699
position  2:    T:0.32680    C:0.26144    A:0.22222    G:0.18954
position  3:    T:0.17647    C:0.32353    A:0.24510    G:0.25490
Average         T:0.22113    C:0.26580    A:0.25926    G:0.25381

#19: Ochotona_princeps
position  1:    T:0.16013    C:0.20915    A:0.32353    G:0.30719
position  2:    T:0.31373    C:0.26797    A:0.22549    G:0.19281
position  3:    T:0.20588    C:0.30392    A:0.18627    G:0.30392
Average         T:0.22658    C:0.26035    A:0.24510    G:0.26797

#20: Oryctolagus_cuniculus
position  1:    T:0.16013    C:0.19608    A:0.33333    G:0.31046
position  2:    T:0.32026    C:0.27451    A:0.21569    G:0.18954
position  3:    T:0.14379    C:0.34314    A:0.21242    G:0.30065
Average         T:0.20806    C:0.27124    A:0.25381    G:0.26688

#21: Phoca_vitulina 
position  1:    T:0.15686    C:0.20915    A:0.31046    G:0.32353
position  2:    T:0.31699    C:0.28105    A:0.22222    G:0.17974
position  3:    T:0.19281    C:0.30065    A:0.24183    G:0.26471
Average         T:0.22222    C:0.26362    A:0.25817    G:0.25599

#22: Rattus_norvegicus
position  1:    T:0.17974    C:0.19608    A:0.32353    G:0.30065
position  2:    T:0.31373    C:0.27778    A:0.22876    G:0.17974
position  3:    T:0.17320    C:0.33987    A:0.20588    G:0.28105
Average         T:0.22222    C:0.27124    A:0.25272    G:0.25381

#23: Sorex_araneus  
position  1:    T:0.15033    C:0.21569    A:0.30065    G:0.33333
position  2:    T:0.31699    C:0.25490    A:0.25817    G:0.16993
position  3:    T:0.07516    C:0.45425    A:0.09804    G:0.37255
Average         T:0.18083    C:0.30828    A:0.21895    G:0.29194

#24: Talpa_europaea 
position  1:    T:0.14706    C:0.22222    A:0.30719    G:0.32353
position  2:    T:0.32026    C:0.27451    A:0.22222    G:0.18301
position  3:    T:0.07843    C:0.46078    A:0.07516    G:0.38562
Average         T:0.18192    C:0.31917    A:0.20153    G:0.29739

#25: Talpa_occidentalis
position  1:    T:0.15033    C:0.22222    A:0.30719    G:0.32026
position  2:    T:0.32026    C:0.27451    A:0.22222    G:0.18301
position  3:    T:0.07843    C:0.46405    A:0.07190    G:0.38562
Average         T:0.18301    C:0.32026    A:0.20044    G:0.29630

Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT     133 | Ser S TCT      77 | Tyr Y TAT      66 | Cys C TGT      60
      TTC     235 |       TCC     131 |       TAC     148 |       TGC     121
Leu L TTA      37 |       TCA      85 | *** * TAA       0 | *** * TGA       0
      TTG      82 |       TCG      44 |       TAG       0 | Trp W TGG      55
------------------------------------------------------------------------------
Leu L CTT      90 | Pro P CCT      83 | His H CAT      25 | Arg R CGT       3
      CTC     171 |       CCC     146 |       CAC      79 |       CGC      36
      CTA      59 |       CCA      64 | Gln Q CAA     101 |       CGA      45
      CTG     337 |       CCG     105 |       CAG     196 |       CGG      41
------------------------------------------------------------------------------
Ile I ATT      90 | Thr T ACT     122 | Asn N AAT      98 | Ser S AGT      67
      ATC     281 |       ACC     272 |       AAC      98 |       AGC     147
      ATA      52 |       ACA     257 | Lys K AAA     242 | Arg R AGA      98
Met M ATG     203 |       ACG     119 |       AAG     183 |       AGG     101
------------------------------------------------------------------------------
Val V GTT      27 | Ala A GCT     139 | Asp D GAT      82 | Gly G GGT      85
      GTC     217 |       GCC     223 |       GAC     145 |       GGC     148
      GTA      62 |       GCA     130 | Glu E GAA     154 |       GGA     182
      GTG     353 |       GCG      88 |       GAG     112 |       GGG     217
------------------------------------------------------------------------------

(Ambiguity data are not used in the counts.)


Codon position x base (3x4) table, overall

position  1:    T:0.16656    C:0.20669    A:0.31769    G:0.30906
position  2:    T:0.31756    C:0.27258    A:0.22604    G:0.18381
position  3:    T:0.16303    C:0.33965    A:0.20499    G:0.29233
Average         T:0.21571    C:0.27298    A:0.24958    G:0.26173

Codon frequencies under model, for use in evolver (TTT TTC TTA TTG ... GGG):
  0.00884392  0.01842542  0.01112050  0.01585806
  0.00759142  0.01581597  0.00954559  0.01361221
  0.00629524  0.01311550  0.00000000  0.00000000
  0.00511920  0.01066535  0.00000000  0.00917926
  0.01097507  0.02286545  0.01380024  0.01967943
  0.00942075  0.01962720  0.01184582  0.01689239
  0.00781222  0.01627599  0.00982323  0.01400812
  0.00635280  0.01323542  0.00798812  0.01139122
  0.01686870  0.03514424  0.02121100  0.03024732
  0.01447972  0.03016704  0.01820705  0.02596363
  0.01200740  0.02501622  0.01509832  0.02153051
  0.00976426  0.02034286  0.01227775  0.01750833
  0.01641053  0.03418971  0.02063490  0.02942579
  0.01408644  0.02934769  0.01771254  0.02525844
  0.01168127  0.02433677  0.01468824  0.02094573
  0.00949906  0.01979034  0.01194428  0.01703279



Nei & Gojobori 1986. dN/dS (dN, dS)
(Pairwise deletion)
(Note: This matrix is not used in later ML. analysis.
Use runmode = -2 for ML pairwise comparison.)

Erinaceus_europaeus 
Ictidomys_tridecemlineatus 0.1068 (0.1398 1.3082)
Marmota_flaviventris 0.0976 (0.1342 1.3751) 0.0762 (0.0073 0.0962)
Marmota_marmota      0.0956 (0.1342 1.4037) 0.0642 (0.0059 0.0913) 0.3367 (0.0015 0.0043)
Marmota_monax        0.0919 (0.1342 1.4610) 0.0528 (0.0059 0.1110) 0.0666 (0.0015 0.0219)-1.0000 (0.0000 0.0175)
Urocitellus_parryii  0.0951 (0.1379 1.4504) 0.1266 (0.0073 0.0579) 0.1870 (0.0118 0.0629) 0.1765 (0.0103 0.0582) 0.1520 (0.0103 0.0676)
Ursus_americanus     0.1037 (0.1329 1.2814) 0.1266 (0.0891 0.7041) 0.1263 (0.0849 0.6718) 0.1282 (0.0849 0.6619) 0.1243 (0.0849 0.6827) 0.1318 (0.0913 0.6925)
Ursus_arctos         0.1019 (0.1310 1.2863) 0.1239 (0.0874 0.7058) 0.1235 (0.0832 0.6734) 0.1254 (0.0832 0.6634) 0.1215 (0.0832 0.6844) 0.1290 (0.0896 0.6941)-1.0000 (0.0015 0.0000)
Callorhinus_ursinus  0.0891 (0.1251 1.4042) 0.1379 (0.0890 0.6456) 0.1422 (0.0848 0.5962) 0.1398 (0.0847 0.6061) 0.1398 (0.0847 0.6061) 0.1467 (0.0914 0.6232) 0.1168 (0.0224 0.1913) 0.1087 (0.0208 0.1916)
Heterocephalus_glaber 0.1175 (0.1582 1.3465) 0.1048 (0.0697 0.6652) 0.0970 (0.0624 0.6441) 0.0954 (0.0624 0.6548) 0.0969 (0.0624 0.6445) 0.1094 (0.0737 0.6731) 0.1318 (0.0908 0.6892) 0.1290 (0.0891 0.6908) 0.1643 (0.0918 0.5587)
Homo_sapiens         0.1149 (0.1571 1.3680) 0.1706 (0.1041 0.6100) 0.1774 (0.1005 0.5669) 0.1744 (0.1005 0.5765) 0.1689 (0.1005 0.5952) 0.1808 (0.1107 0.6122) 0.1917 (0.0899 0.4691) 0.1877 (0.0882 0.4701) 0.2462 (0.0876 0.3559) 0.1978 (0.1021 0.5161)
Lemmus_lemmus        0.1245 (0.1493 1.1995) 0.1185 (0.0906 0.7644) 0.1182 (0.0856 0.7236) 0.1163 (0.0855 0.7355) 0.1127 (0.0855 0.7589) 0.1158 (0.0889 0.7676) 0.1267 (0.1028 0.8114) 0.1243 (0.1011 0.8136) 0.1297 (0.1044 0.8045) 0.1329 (0.0937 0.7048) 0.1491 (0.1106 0.7419)
Microtus_ochrogaster 0.1099 (0.1482 1.3491) 0.1050 (0.0876 0.8351) 0.1078 (0.0826 0.7664) 0.1060 (0.0826 0.7790) 0.1044 (0.0826 0.7913) 0.1064 (0.0892 0.8388) 0.1263 (0.1009 0.7989) 0.1238 (0.0992 0.8010) 0.1363 (0.1036 0.7600) 0.1359 (0.0970 0.7141) 0.1510 (0.1129 0.7477) 0.0723 (0.0103 0.1420)
Mus_musculus         0.1104 (0.1420 1.2863) 0.1273 (0.1003 0.7881) 0.1303 (0.0955 0.7327) 0.1282 (0.0955 0.7447) 0.1282 (0.0955 0.7447) 0.1314 (0.1005 0.7651) 0.1420 (0.1097 0.7721) 0.1394 (0.1079 0.7741) 0.1491 (0.1109 0.7440) 0.1438 (0.1098 0.7638) 0.1712 (0.1218 0.7113) 0.0821 (0.0320 0.3898) 0.0885 (0.0351 0.3963)
Mustela_erminea      0.1017 (0.1262 1.2411) 0.1404 (0.0992 0.7068) 0.1430 (0.0949 0.6638) 0.1407 (0.0949 0.6747) 0.1407 (0.0949 0.6747) 0.1505 (0.1014 0.6738) 0.1533 (0.0431 0.2809) 0.1474 (0.0415 0.2814) 0.2136 (0.0422 0.1976) 0.1439 (0.0962 0.6687) 0.1839 (0.0843 0.4584) 0.1418 (0.1100 0.7759) 0.1482 (0.1098 0.7406) 0.1585 (0.1135 0.7157)
Mustela_putorius_furo 0.1035 (0.1262 1.2194) 0.1279 (0.0984 0.7694) 0.1301 (0.0941 0.7231) 0.1280 (0.0941 0.7349) 0.1280 (0.0941 0.7349) 0.1370 (0.1005 0.7338) 0.1500 (0.0431 0.2871) 0.1443 (0.0415 0.2876) 0.1870 (0.0422 0.2257) 0.1404 (0.0981 0.6990) 0.1847 (0.0876 0.4743) 0.1374 (0.1108 0.8066) 0.1437 (0.1106 0.7699) 0.1444 (0.1143 0.7915) 0.1945 (0.0059 0.0303)
Myodes_glareolus     0.1013 (0.1492 1.4733) 0.1006 (0.0893 0.8877) 0.0987 (0.0842 0.8535) 0.0971 (0.0842 0.8678) 0.0940 (0.0842 0.8961) 0.0986 (0.0908 0.9209) 0.1183 (0.1006 0.8504) 0.1160 (0.0989 0.8528) 0.1250 (0.1021 0.8172) 0.1242 (0.0931 0.7501) 0.1330 (0.1067 0.8020) 0.0741 (0.0102 0.1382) 0.0717 (0.0088 0.1224) 0.0811 (0.0350 0.4312) 0.1411 (0.1086 0.7696) 0.1367 (0.1094 0.8003)
Neovison_vison       0.1049 (0.1229 1.1713) 0.1276 (0.0965 0.7565) 0.1297 (0.0922 0.7110) 0.1276 (0.0922 0.7225) 0.1276 (0.0922 0.7225) 0.1411 (0.0987 0.6995) 0.1381 (0.0354 0.2560) 0.1318 (0.0338 0.2565) 0.1752 (0.0345 0.1971) 0.1454 (0.0974 0.6696) 0.1982 (0.0924 0.4661) 0.1367 (0.1061 0.7766) 0.1429 (0.1059 0.7414) 0.1460 (0.1096 0.7505) 0.4008 (0.0103 0.0258) 0.3961 (0.0111 0.0280) 0.1339 (0.1047 0.7825)
Ochotona_princeps    0.1663 (0.1536 0.9236) 0.1024 (0.0869 0.8488) 0.0997 (0.0860 0.8626) 0.0981 (0.0860 0.8769) 0.0981 (0.0860 0.8769) 0.1097 (0.0943 0.8593) 0.1436 (0.0977 0.6803) 0.1408 (0.0960 0.6820) 0.1570 (0.0954 0.6074) 0.1149 (0.0805 0.7003) 0.1681 (0.1117 0.6644) 0.1160 (0.0981 0.8452) 0.1205 (0.1040 0.8630) 0.1285 (0.1074 0.8358) 0.1521 (0.1009 0.6637) 0.1530 (0.1020 0.6671) 0.1108 (0.1011 0.9131) 0.1543 (0.1007 0.6527)
Oryctolagus_cuniculus 0.1358 (0.1281 0.9432) 0.1013 (0.0617 0.6086) 0.1021 (0.0616 0.6031) 0.1004 (0.0616 0.6131) 0.0973 (0.0616 0.6328) 0.1129 (0.0712 0.6304) 0.1063 (0.0707 0.6646) 0.1036 (0.0690 0.6661) 0.1210 (0.0684 0.5654) 0.1005 (0.0719 0.7148) 0.1502 (0.0858 0.5717) 0.1008 (0.0865 0.8583) 0.1035 (0.0877 0.8471) 0.1070 (0.0915 0.8554) 0.1135 (0.0730 0.6432) 0.1138 (0.0738 0.6482) 0.0910 (0.0860 0.9451) 0.1060 (0.0706 0.6661) 0.1546 (0.0572 0.3699)
Phoca_vitulina       0.0951 (0.1241 1.3048) 0.1403 (0.0889 0.6334) 0.1401 (0.0846 0.6037) 0.1423 (0.0846 0.5946) 0.1423 (0.0846 0.5946) 0.1493 (0.0913 0.6114) 0.1284 (0.0224 0.1744) 0.1194 (0.0209 0.1747) 0.1555 (0.0089 0.0570) 0.1619 (0.0916 0.5660) 0.2462 (0.0866 0.3519) 0.1307 (0.1028 0.7867) 0.1387 (0.1026 0.7396) 0.1442 (0.1080 0.7486) 0.2343 (0.0423 0.1805) 0.2034 (0.0423 0.2078) 0.1259 (0.1006 0.7989) 0.1921 (0.0346 0.1800) 0.1652 (0.0969 0.5867) 0.1235 (0.0691 0.5592)
Rattus_norvegicus    0.1241 (0.1491 1.2015) 0.1175 (0.1020 0.8677) 0.1166 (0.0971 0.8324) 0.1147 (0.0971 0.8462) 0.1112 (0.0971 0.8734) 0.1157 (0.1038 0.8973) 0.1311 (0.1079 0.8233) 0.1286 (0.1062 0.8255) 0.1369 (0.1089 0.7954) 0.1503 (0.1106 0.7361) 0.1465 (0.1174 0.8013) 0.0770 (0.0335 0.4354) 0.0779 (0.0351 0.4500) 0.0665 (0.0177 0.2662) 0.1533 (0.1117 0.7285) 0.1419 (0.1125 0.7934) 0.0795 (0.0350 0.4397) 0.1434 (0.1078 0.7522) 0.1025 (0.1023 0.9981) 0.0981 (0.0882 0.8990) 0.1331 (0.1062 0.7982)
Sorex_araneus        0.2244 (0.1458 0.6499) 0.1828 (0.1851 1.0124) 0.1690 (0.1801 1.0658) 0.1694 (0.1792 1.0577) 0.1610 (0.1792 1.1132) 0.1688 (0.1821 1.0790) 0.1318 (0.1537 1.1656) 0.1328 (0.1554 1.1698) 0.1256 (0.1566 1.2470) 0.1751 (0.1947 1.1119) 0.1261 (0.1689 1.3389) 0.1544 (0.1685 1.0911) 0.1581 (0.1677 1.0602) 0.1453 (0.1677 1.1542) 0.1289 (0.1506 1.1680) 0.1293 (0.1497 1.1579) 0.1507 (0.1677 1.1127) 0.1334 (0.1513 1.1348) 0.1797 (0.1956 1.0886) 0.2067 (0.1756 0.8492) 0.1390 (0.1559 1.1213) 0.1583 (0.1656 1.0461)
Talpa_europaea       0.1767 (0.1042 0.5895) 0.1404 (0.1074 0.7647) 0.1267 (0.1047 0.8263) 0.1265 (0.1030 0.8141) 0.1226 (0.1030 0.8398) 0.1273 (0.1064 0.8361) 0.1189 (0.1069 0.8992) 0.1166 (0.1051 0.9017) 0.1066 (0.1048 0.9829) 0.1471 (0.1340 0.9105) 0.1448 (0.1402 0.9678) 0.1301 (0.1370 1.0530) 0.1288 (0.1383 1.0731) 0.1376 (0.1343 0.9761) 0.1089 (0.1059 0.9725) 0.1106 (0.1059 0.9571) 0.1248 (0.1393 1.1161) 0.1060 (0.1026 0.9678) 0.1525 (0.1364 0.8944) 0.1414 (0.1119 0.7917) 0.1140 (0.1055 0.9253) 0.1449 (0.1366 0.9428) 0.2233 (0.1437 0.6434)
Talpa_occidentalis   0.1733 (0.1024 0.5910) 0.1357 (0.1090 0.8033) 0.1224 (0.1063 0.8686) 0.1222 (0.1046 0.8557) 0.1222 (0.1046 0.8557) 0.1229 (0.1081 0.8790) 0.1147 (0.1051 0.9162) 0.1125 (0.1034 0.9188) 0.1011 (0.1030 1.0185) 0.1470 (0.1321 0.8991) 0.1379 (0.1383 1.0029) 0.1279 (0.1352 1.0568) 0.1288 (0.1364 1.0593) 0.1331 (0.1325 0.9954) 0.1033 (0.1041 1.0076) 0.1050 (0.1041 0.9915) 0.1227 (0.1374 1.1204) 0.1022 (0.1009 0.9867) 0.1453 (0.1346 0.9259) 0.1304 (0.1102 0.8448) 0.1083 (0.1037 0.9580) 0.1425 (0.1348 0.9460) 0.2234 (0.1418 0.6349) 0.0682 (0.0015 0.0215)

TREE #  1:  (((((((14, 22), ((17, 13), 12)), 10), ((3, (4, 5)), (6, 2))), (20, 19)), 11), ((((16, 15), 18), ((8, 7), (21, 9))), ((23, (24, 25)), 1)));   MP score: -1
This is a rooted tree.  Please check!
check convergence..
lnL(ntime: 48  np: 51):  -6849.228579      +0.000000
  26..27   27..28   28..29   29..30   30..31   31..32   32..14   32..22   31..33   33..34   34..17   34..13   33..12   30..10   29..35   35..36   36..3    36..37   37..4    37..5    35..38   38..6    38..2    28..39   39..20   39..19   27..11   26..40   40..41   41..42   42..43   43..16   43..15   42..18   41..44   44..45   45..8    45..7    44..46   46..21   46..9    40..47   47..48   48..23   48..49   49..24   49..25   47..1  
 0.047416 0.057137 0.052724 0.022544 0.350410 0.134161 0.100093 0.134129 0.072390 0.020598 0.055931 0.057691 0.054701 0.305791 0.314247 0.009324 0.006648 0.000004 0.000004 0.013344 0.035314 0.023873 0.037488 0.160384 0.151533 0.275261 0.264938 0.000004 0.131426 0.131071 0.019977 0.020138 0.016016 0.006974 0.018726 0.124312 0.000004 0.003253 0.034126 0.025398 0.037380 0.460438 0.046385 0.703191 0.266550 0.010315 0.009945 0.532839 2.286415 0.133723 0.112763

Note: Branch length is defined as number of nucleotide substitutions per codon (not per nucleotide site).

tree length =  5.356545

(((((((14: 0.100093, 22: 0.134129): 0.134161, ((17: 0.055931, 13: 0.057691): 0.020598, 12: 0.054701): 0.072390): 0.350410, 10: 0.305791): 0.022544, ((3: 0.006648, (4: 0.000004, 5: 0.013344): 0.000004): 0.009324, (6: 0.023873, 2: 0.037488): 0.035314): 0.314247): 0.052724, (20: 0.151533, 19: 0.275261): 0.160384): 0.057137, 11: 0.264938): 0.047416, ((((16: 0.020138, 15: 0.016016): 0.019977, 18: 0.006974): 0.131071, ((8: 0.000004, 7: 0.003253): 0.124312, (21: 0.025398, 9: 0.037380): 0.034126): 0.018726): 0.131426, ((23: 0.703191, (24: 0.010315, 25: 0.009945): 0.266550): 0.046385, 1: 0.532839): 0.460438): 0.000004);

(((((((Mus_musculus: 0.100093, Rattus_norvegicus: 0.134129): 0.134161, ((Myodes_glareolus: 0.055931, Microtus_ochrogaster: 0.057691): 0.020598, Lemmus_lemmus: 0.054701): 0.072390): 0.350410, Heterocephalus_glaber: 0.305791): 0.022544, ((Marmota_flaviventris: 0.006648, (Marmota_marmota: 0.000004, Marmota_monax: 0.013344): 0.000004): 0.009324, (Urocitellus_parryii: 0.023873, Ictidomys_tridecemlineatus: 0.037488): 0.035314): 0.314247): 0.052724, (Oryctolagus_cuniculus: 0.151533, Ochotona_princeps: 0.275261): 0.160384): 0.057137, Homo_sapiens: 0.264938): 0.047416, ((((Mustela_putorius_furo: 0.020138, Mustela_erminea: 0.016016): 0.019977, Neovison_vison: 0.006974): 0.131071, ((Ursus_arctos: 0.000004, Ursus_americanus: 0.003253): 0.124312, (Phoca_vitulina: 0.025398, Callorhinus_ursinus: 0.037380): 0.034126): 0.018726): 0.131426, ((Sorex_araneus: 0.703191, (Talpa_europaea: 0.010315, Talpa_occidentalis: 0.009945): 0.266550): 0.046385, Erinaceus_europaeus: 0.532839): 0.460438): 0.000004);

Detailed output identifying parameters

kappa (ts/tv) =  2.28642

w (dN/dS) for branches:  0.13372 0.11276

dN & dS for each branch

 branch          t       N       S   dN/dS      dN      dS  N*dN  S*dS

  26..27     0.047   676.7   241.3  0.1337  0.0058  0.0437   4.0  10.6
  27..28     0.057   676.7   241.3  0.1337  0.0070  0.0527   4.8  12.7
  28..29     0.053   676.7   241.3  0.1337  0.0065  0.0486   4.4  11.7
  29..30     0.023   676.7   241.3  0.1337  0.0028  0.0208   1.9   5.0
  30..31     0.350   676.7   241.3  0.1337  0.0432  0.3232  29.2  78.0
  31..32     0.134   676.7   241.3  0.1337  0.0165  0.1237  11.2  29.9
  32..14     0.100   676.7   241.3  0.1337  0.0123  0.0923   8.4  22.3
  32..22     0.134   676.7   241.3  0.1337  0.0165  0.1237  11.2  29.8
  31..33     0.072   676.7   241.3  0.1337  0.0089  0.0668   6.0  16.1
  33..34     0.021   676.7   241.3  0.1337  0.0025  0.0190   1.7   4.6
  34..17     0.056   676.7   241.3  0.1337  0.0069  0.0516   4.7  12.4
  34..13     0.058   676.7   241.3  0.1337  0.0071  0.0532   4.8  12.8
  33..12     0.055   676.7   241.3  0.1337  0.0067  0.0505   4.6  12.2
  30..10     0.306   676.7   241.3  0.1337  0.0377  0.2821  25.5  68.0
  29..35     0.314   676.7   241.3  0.1337  0.0388  0.2899  26.2  69.9
  35..36     0.009   676.7   241.3  0.1337  0.0012  0.0086   0.8   2.1
  36..3      0.007   676.7   241.3  0.1128  0.0007  0.0064   0.5   1.5
  36..37     0.000   676.7   241.3  0.1337  0.0000  0.0000   0.0   0.0
  37..4      0.000   676.7   241.3  0.1128  0.0000  0.0000   0.0   0.0
  37..5      0.013   676.7   241.3  0.1128  0.0014  0.0129   1.0   3.1
  35..38     0.035   676.7   241.3  0.1337  0.0044  0.0326   2.9   7.9
  38..6      0.024   676.7   241.3  0.1128  0.0026  0.0230   1.8   5.5
  38..2      0.037   676.7   241.3  0.1128  0.0041  0.0361   2.8   8.7
  28..39     0.160   676.7   241.3  0.1337  0.0198  0.1479  13.4  35.7
  39..20     0.152   676.7   241.3  0.1337  0.0187  0.1398  12.6  33.7
  39..19     0.275   676.7   241.3  0.1337  0.0340  0.2539  23.0  61.3
  27..11     0.265   676.7   241.3  0.1337  0.0327  0.2444  22.1  59.0
  26..40     0.000   676.7   241.3  0.1337  0.0000  0.0000   0.0   0.0
  40..41     0.131   676.7   241.3  0.1337  0.0162  0.1212  11.0  29.2
  41..42     0.131   676.7   241.3  0.1337  0.0162  0.1209  10.9  29.2
  42..43     0.020   676.7   241.3  0.1337  0.0025  0.0184   1.7   4.4
  43..16     0.020   676.7   241.3  0.1337  0.0025  0.0186   1.7   4.5
  43..15     0.016   676.7   241.3  0.1337  0.0020  0.0148   1.3   3.6
  42..18     0.007   676.7   241.3  0.1337  0.0009  0.0064   0.6   1.6
  41..44     0.019   676.7   241.3  0.1337  0.0023  0.0173   1.6   4.2
  44..45     0.124   676.7   241.3  0.1337  0.0153  0.1147  10.4  27.7
  45..8      0.000   676.7   241.3  0.1128  0.0000  0.0000   0.0   0.0
  45..7      0.003   676.7   241.3  0.1128  0.0004  0.0031   0.2   0.8
  44..46     0.034   676.7   241.3  0.1337  0.0042  0.0315   2.8   7.6
  46..21     0.025   676.7   241.3  0.1337  0.0031  0.0234   2.1   5.7
  46..9      0.037   676.7   241.3  0.1337  0.0046  0.0345   3.1   8.3
  40..47     0.460   676.7   241.3  0.1337  0.0568  0.4247  38.4 102.5
  47..48     0.046   676.7   241.3  0.1337  0.0057  0.0428   3.9  10.3
  48..23     0.703   676.7   241.3  0.1337  0.0867  0.6486  58.7 156.5
  48..49     0.267   676.7   241.3  0.1337  0.0329  0.2459  22.2  59.3
  49..24     0.010   676.7   241.3  0.1337  0.0013  0.0095   0.9   2.3
  49..25     0.010   676.7   241.3  0.1337  0.0012  0.0092   0.8   2.2
  47..1      0.533   676.7   241.3  0.1128  0.0579  0.5134  39.2 123.9

tree length for dN:       0.6516
tree length for dS:       4.9663

dS tree:
(((((((Mus_musculus: 0.092325, Rattus_norvegicus: 0.123719): 0.123748, ((Myodes_glareolus: 0.051590, Microtus_ochrogaster: 0.053213): 0.018999, Lemmus_lemmus: 0.050455): 0.066771): 0.323214, Heterocephalus_glaber: 0.282058): 0.020794, ((Marmota_flaviventris: 0.006406, (Marmota_marmota: 0.000004, Marmota_monax: 0.012858): 0.000004): 0.008600, (Urocitellus_parryii: 0.023004, Ictidomys_tridecemlineatus: 0.036123): 0.032573): 0.289858): 0.048632, (Oryctolagus_cuniculus: 0.139772, Ochotona_princeps: 0.253898): 0.147936): 0.052702, Homo_sapiens: 0.244375): 0.043736, ((((Mustela_putorius_furo: 0.018575, Mustela_erminea: 0.014773): 0.018427, Neovison_vison: 0.006432): 0.120899, ((Ursus_arctos: 0.000004, Ursus_americanus: 0.003134): 0.114664, (Phoca_vitulina: 0.023427, Callorhinus_ursinus: 0.034479): 0.031477): 0.017273): 0.121225, ((Sorex_araneus: 0.648615, (Talpa_europaea: 0.009515, Talpa_occidentalis: 0.009174): 0.245863): 0.042785, Erinaceus_europaeus: 0.513438): 0.424703): 0.000004);
dN tree:
(((((((Mus_musculus: 0.012346, Rattus_norvegicus: 0.016544): 0.016548, ((Myodes_glareolus: 0.006899, Microtus_ochrogaster: 0.007116): 0.002541, Lemmus_lemmus: 0.006747): 0.008929): 0.043221, Heterocephalus_glaber: 0.037718): 0.002781, ((Marmota_flaviventris: 0.000722, (Marmota_marmota: 0.000000, Marmota_monax: 0.001450): 0.000000): 0.001150, (Urocitellus_parryii: 0.002594, Ictidomys_tridecemlineatus: 0.004073): 0.004356): 0.038761): 0.006503, (Oryctolagus_cuniculus: 0.018691, Ochotona_princeps: 0.033952): 0.019782): 0.007048, Homo_sapiens: 0.032679): 0.005849, ((((Mustela_putorius_furo: 0.002484, Mustela_erminea: 0.001975): 0.002464, Neovison_vison: 0.000860): 0.016167, ((Ursus_arctos: 0.000000, Ursus_americanus: 0.000353): 0.015333, (Phoca_vitulina: 0.003133, Callorhinus_ursinus: 0.004611): 0.004209): 0.002310): 0.016211, ((Sorex_araneus: 0.086735, (Talpa_europaea: 0.001272, Talpa_occidentalis: 0.001227): 0.032878): 0.005721, Erinaceus_europaeus: 0.057897): 0.056793): 0.000000);

w ratios as node labels:
(((((((Mus_musculus #0.133723 , Rattus_norvegicus #0.133723 ) #0.133723 , ((Myodes_glareolus #0.133723 , Microtus_ochrogaster #0.133723 ) #0.133723 , Lemmus_lemmus #0.133723 ) #0.133723 ) #0.133723 , Heterocephalus_glaber #0.133723 ) #0.133723 , ((Marmota_flaviventris #0.112763 , (Marmota_marmota #0.112763 , Marmota_monax #0.112763 ) #0.133723 ) #0.133723 , (Urocitellus_parryii #0.112763 , Ictidomys_tridecemlineatus #0.112763 ) #0.133723 ) #0.133723 ) #0.133723 , (Oryctolagus_cuniculus #0.133723 , Ochotona_princeps #0.133723 ) #0.133723 ) #0.133723 , Homo_sapiens #0.133723 ) #0.133723 , ((((Mustela_putorius_furo #0.133723 , Mustela_erminea #0.133723 ) #0.133723 , Neovison_vison #0.133723 ) #0.133723 , ((Ursus_arctos #0.112763 , Ursus_americanus #0.112763 ) #0.133723 , (Phoca_vitulina #0.133723 , Callorhinus_ursinus #0.133723 ) #0.133723 ) #0.133723 ) #0.133723 , ((Sorex_araneus #0.133723 , (Talpa_europaea #0.133723 , Talpa_occidentalis #0.133723 ) #0.133723 ) #0.133723 , Erinaceus_europaeus #0.112763 ) #0.133723 ) #0.133723 );


Time used:  4:44
