
CODONML in paml version 4.10.10, 29 Jan 2026

----------------------------------------------
Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT
      TTC |       TCC |       TAC |       TGC
Leu L TTA |       TCA | *** * TAA | *** * TGA
      TTG |       TCG |       TAG | Trp W TGG
----------------------------------------------
Leu L CTT | Pro P CCT | His H CAT | Arg R CGT
      CTC |       CCC |       CAC |       CGC
      CTA |       CCA | Gln Q CAA |       CGA
      CTG |       CCG |       CAG |       CGG
----------------------------------------------
Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT
      ATC |       ACC |       AAC |       AGC
      ATA |       ACA | Lys K AAA | Arg R AGA
Met M ATG |       ACG |       AAG |       AGG
----------------------------------------------
Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT
      GTC |       GCC |       GAC |       GGC
      GTA |       GCA | Glu E GAA |       GGA
      GTG |       GCG |       GAG |       GGG
----------------------------------------------
Nice code, uuh?
ns = 25  	ls = 918
Reading sequences, sequential format..
Reading seq # 1: Erinaceus_europaeus       
Reading seq # 2: Ictidomys_tridecemlineatus       
Reading seq # 3: Marmota_flaviventris       
Reading seq # 4: Marmota_marmota       
Reading seq # 5: Marmota_monax       
Reading seq # 6: Urocitellus_parryii       
Reading seq # 7: Ursus_americanus       
Reading seq # 8: Ursus_arctos       
Reading seq # 9: Callorhinus_ursinus       
Reading seq #10: Heterocephalus_glaber       
Reading seq #11: Homo_sapiens       
Reading seq #12: Lemmus_lemmus       
Reading seq #13: Microtus_ochrogaster       
Reading seq #14: Mus_musculus       
Reading seq #15: Mustela_erminea       
Reading seq #16: Mustela_putorius_furo       
Reading seq #17: Myodes_glareolus       
Reading seq #18: Neovison_vison       
Reading seq #19: Ochotona_princeps       
Reading seq #20: Oryctolagus_cuniculus       
Reading seq #21: Phoca_vitulina       
Reading seq #22: Rattus_norvegicus       
Reading seq #23: Sorex_araneus       
Reading seq #24: Talpa_europaea       
Reading seq #25: Talpa_occidentalis       
Sequences read..
Counting site patterns..  0:00

Compressing,    302 patterns at    306 /    306 sites (100.0%),  0:00

Collecting fpatt[] & pose[],    302 patterns at    306 /    306 sites (100.0%),  0:00
1 ambiguous codons are seen in the data:
 ---
Counting codons..
NG distances for seqs.:
   1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20  21  22  23  24  25

     2400 bytes for distance
   294752 bytes for conP
        0 bytes for fhK
  5000000 bytes for space

2 branch types are in tree. Stop if wrong.
Tree is 
(((((((Mus_musculus, Rattus_norvegicus), ((Myodes_glareolus, Microtus_ochrogaster), Lemmus_lemmus)), Heterocephalus_glaber), ((Marmota_flaviventris #1, (Marmota_marmota #1, Marmota_monax #1)), (Urocitellus_parryii #1, Ictidomys_tridecemlineatus #1))), (Oryctolagus_cuniculus, Ochotona_princeps)), Homo_sapiens), ((((Mustela_putorius_furo, Mustela_erminea), Neovison_vison), ((Ursus_arctos #1, Ursus_americanus #1), (Phoca_vitulina, Callorhinus_ursinus))), ((Sorex_araneus, (Talpa_europaea, Talpa_occidentalis)), Erinaceus_europaeus #1)));

TREE #  1
(((((((14, 22), ((17, 13), 12)), 10), ((3, (4, 5)), (6, 2))), (20, 19)), 11), ((((16, 15), 18), ((8, 7), (21, 9))), ((23, (24, 25)), 1)));   MP score: -1
This is a rooted tree, without clock.  Check.

   1   18.116354
   2   17.603258
   3   17.553085
   4   17.544177
   5   17.523076
   6   17.516407
   7   17.516248
   8   17.516211
   9   17.516208
  3537024 bytes for conP, adjusted

    0.044086    0.052276    0.053413    0.015873    0.157909    0.068180    0.079832    0.112202    0.056488    0.072521    0.035449    0.024850    0.033215    0.167636    0.148578    0.060410    0.057776    0.068980    0.019889    0.029129    0.050863    0.021556    0.045115    0.089398    0.098680    0.108819    0.155495    0.000093    0.141487    0.106137    0.038484    0.028186    0.052727    0.020513    0.032075    0.072191    0.034215    0.050687    0.073004    0.020687    0.079237    0.223331    0.000000    0.198327    0.163152    0.032766    0.063715    0.229859    0.140067    0.125524    0.133590

ntime & nrate & np:    48     3    51

Bounds (np=51):
   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000004   0.000100   0.000100   0.000100
  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000  50.000000 999.000000 999.000000 999.000000

np =    51
lnL0 = -8014.494515

Iterating by ming2
Initial: fx=  8014.494515
x=  0.04409  0.05228  0.05341  0.01587  0.15791  0.06818  0.07983  0.11220  0.05649  0.07252  0.03545  0.02485  0.03322  0.16764  0.14858  0.06041  0.05778  0.06898  0.01989  0.02913  0.05086  0.02156  0.04512  0.08940  0.09868  0.10882  0.15550  0.00009  0.14149  0.10614  0.03848  0.02819  0.05273  0.02051  0.03208  0.07219  0.03422  0.05069  0.07300  0.02069  0.07924  0.22333  0.00000  0.19833  0.16315  0.03277  0.06371  0.22986  0.14007  0.12552  0.13359

  1 h-m-p  0.0000 0.0001 4554.4066 ++     7431.113600  m 0.0001    56 | 1/51
  2 h-m-p  0.0000 0.0000 1327.6270 ++     7364.180482  m 0.0000   110 | 2/51
  3 h-m-p  0.0000 0.0001 1691.7805 +CYYCC  7319.586286  4 0.0000   172 | 2/51
  4 h-m-p  0.0000 0.0000 1410.0576 ++     7312.915544  m 0.0000   226 | 3/51
  5 h-m-p  0.0000 0.0002 805.3290 ++     7284.174254  m 0.0002   280 | 4/51
  6 h-m-p  0.0000 0.0002 210.4181 +YYCYCCC  7278.402968  6 0.0002   344 | 4/51
  7 h-m-p  0.0000 0.0000 3032.1292 YCCCC  7272.727516  4 0.0000   405 | 4/51
  8 h-m-p  0.0001 0.0005 388.8244 YCCC   7260.740247  3 0.0003   464 | 4/51
  9 h-m-p  0.0000 0.0002 845.4743 +YCCC  7253.570255  3 0.0001   524 | 4/51
 10 h-m-p  0.0000 0.0002 357.4573 +YYYYCC  7243.058235  5 0.0002   585 | 4/51
 11 h-m-p  0.0000 0.0000 1060.2542 YCCCC  7241.458866  4 0.0000   646 | 4/51
 12 h-m-p  0.0001 0.0006 194.5098 +CYCCC  7227.823168  4 0.0004   709 | 4/51
 13 h-m-p  0.0001 0.0003 598.3349 +YYCCC  7207.396813  4 0.0002   770 | 4/51
 14 h-m-p  0.0000 0.0001 545.0471 ++     7186.748271  m 0.0001   824 | 4/51
 15 h-m-p  0.0000 0.0000 525.3961 
h-m-p:      1.16070065e-21      5.80350327e-21      5.25396112e+02  7186.748271
..  | 4/51
 16 h-m-p  0.0000 0.0000 1121.8967 ++     7153.627388  m 0.0000   929 | 3/51
 17 h-m-p  0.0000 0.0000 46106.6985 
h-m-p:      3.86458000e-22      1.93229000e-21      4.61066985e+04  7153.627388
..  | 3/51
 18 h-m-p  0.0000 0.0002 222129.0070 ---YYCCYC  7147.915402  5 0.0000  1045 | 3/51
 19 h-m-p  0.0000 0.0000 782.0485 ++     7147.897864  m 0.0000  1099 | 4/51
 20 h-m-p  0.0000 0.0000 1516.5868 +YYYYYCCCC  7141.269193  8 0.0000  1165 | 4/51
 21 h-m-p  0.0000 0.0000 2446.1773 +YYYCCCC  7137.899817  6 0.0000  1229 | 4/51
 22 h-m-p  0.0000 0.0000 8012.7130 ++     7109.234119  m 0.0000  1283 | 4/51
 23 h-m-p  0.0000 0.0001 625.8549 ++     7098.012852  m 0.0001  1337 | 4/51
 24 h-m-p  0.0000 0.0002 565.4882 +YYYCCC  7086.884864  5 0.0001  1399 | 3/51
 25 h-m-p  0.0000 0.0001 547.4099 YCYC   7086.236810  3 0.0000  1457 | 3/51
 26 h-m-p  0.0001 0.0003 106.8824 CCCC   7085.760096  3 0.0001  1517 | 3/51
 27 h-m-p  0.0002 0.0026  58.0299 +YCC   7085.062325  2 0.0005  1575 | 3/51
 28 h-m-p  0.0003 0.0021 109.1732 CC     7084.488009  1 0.0003  1631 | 3/51
 29 h-m-p  0.0001 0.0005  68.4859 +YC    7084.011777  1 0.0004  1687 | 3/51
 30 h-m-p  0.0004 0.0033  73.5673 YCC    7083.721896  2 0.0003  1744 | 3/51
 31 h-m-p  0.0003 0.0015  51.9622 CYC    7083.510120  2 0.0003  1801 | 3/51
 32 h-m-p  0.0005 0.0044  32.5124 C      7083.288439  0 0.0004  1855 | 3/51
 33 h-m-p  0.0001 0.0005  36.6896 ++     7082.956910  m 0.0005  1909 | 3/51
 34 h-m-p  0.0004 0.0036  43.4574 YCC    7082.163231  2 0.0007  1966 | 3/51
 35 h-m-p  0.0004 0.0020  45.5716 CC     7081.062872  1 0.0006  2022 | 3/51
 36 h-m-p  0.0001 0.0003  62.8142 ++     7078.975386  m 0.0003  2076 | 3/51
 37 h-m-p  0.0000 0.0000 315.7786 
h-m-p:      1.41858984e-21      7.09294922e-21      3.15778615e+02  7078.975386
..  | 3/51
 38 h-m-p  0.0000 0.0002 1186.1624 +YCCC  7067.111207  3 0.0001  2187 | 3/51
 39 h-m-p  0.0000 0.0002 792.2368 +YYYYCYCCC  7027.337477  8 0.0001  2253 | 3/51
 40 h-m-p  0.0000 0.0001 963.3330 +YYYYYYYCCC  7011.053209 10 0.0001  2320 | 3/51
 41 h-m-p  0.0000 0.0000 7158.5217 +YYCYCCC  6998.916121  6 0.0000  2384 | 3/51
 42 h-m-p  0.0000 0.0000 40974.5462 +YYYCYCYC  6985.813314  7 0.0000  2449 | 3/51
 43 h-m-p  0.0000 0.0000 4556.8766 +YCYYCC  6942.126916  5 0.0000  2512 | 3/51
 44 h-m-p  0.0001 0.0004 3191.3282 YYCCC  6937.855090  4 0.0000  2572 | 3/51
 45 h-m-p  0.0000 0.0002 631.9319 +YCCC  6919.020044  3 0.0002  2632 | 3/51
 46 h-m-p  0.0000 0.0000 388.8260 ++     6916.880712  m 0.0000  2686 | 3/51
 47 h-m-p  0.0000 0.0000 390.6572 
h-m-p:      6.91085677e-22      3.45542839e-21      3.90657236e+02  6916.880712
..  | 3/51
 48 h-m-p  0.0000 0.0000 550.1242 +YYCYYCC  6909.574695  6 0.0000  2800 | 3/51
 49 h-m-p  0.0000 0.0000 1699.5674 +YYYCCC  6904.592026  5 0.0000  2862 | 3/51
 50 h-m-p  0.0000 0.0000 1607.9859 +YYCCC  6896.695062  4 0.0000  2923 | 3/51
 51 h-m-p  0.0000 0.0000 529.4947 +YYCYC  6894.297275  4 0.0000  2983 | 3/51
 52 h-m-p  0.0000 0.0002 260.3549 CYCCC  6892.410489  4 0.0001  3044 | 3/51
 53 h-m-p  0.0000 0.0002 397.8341 YCCCC  6889.655686  4 0.0001  3105 | 3/51
 54 h-m-p  0.0000 0.0001 967.6479 ++     6885.218462  m 0.0001  3159 | 3/51
 55 h-m-p  0.0000 0.0000 491.3017 
h-m-p:      9.31017898e-21      4.65508949e-20      4.91301657e+02  6885.218462
..  | 3/51
 56 h-m-p  0.0000 0.0000 395.3688 +YYYYYYY  6881.817949  6 0.0000  3271 | 3/51
 57 h-m-p  0.0000 0.0001 606.4891 CYC    6880.093086  2 0.0000  3328 | 3/51
 58 h-m-p  0.0000 0.0002 237.7542 CYC    6879.233718  2 0.0001  3385 | 3/51
 59 h-m-p  0.0000 0.0002 220.1355 +YCCC  6877.688002  3 0.0001  3445 | 3/51
 60 h-m-p  0.0000 0.0001 374.5404 ++     6876.100102  m 0.0001  3499 | 3/51
 61 h-m-p  0.0000 0.0000 456.4880 
h-m-p:      6.93329727e-21      3.46664864e-20      4.56487965e+02  6876.100102
..  | 3/51
 62 h-m-p  0.0000 0.0000 214.6218 +YCYC  6875.346214  3 0.0000  3609 | 3/51
 63 h-m-p  0.0000 0.0002 280.6571 YCCC   6874.548933  3 0.0000  3668 | 3/51
 64 h-m-p  0.0001 0.0003 188.2294 CYC    6873.938501  2 0.0001  3725 | 3/51
 65 h-m-p  0.0001 0.0003 271.9334 +YYCC  6871.812211  3 0.0002  3784 | 3/51
 66 h-m-p  0.0000 0.0001 550.6636 ++     6867.950238  m 0.0001  3838 | 3/51
 67 h-m-p  0.0000 0.0000 1224.4764 
h-m-p:      1.73485881e-21      8.67429403e-21      1.22447644e+03  6867.950238
..  | 3/51
 68 h-m-p  0.0000 0.0001 278.3283 +YYC   6866.814922  2 0.0000  3946 | 3/51
 69 h-m-p  0.0000 0.0002 340.9108 CCCC   6866.210482  3 0.0000  4006 | 3/51
 70 h-m-p  0.0000 0.0001 274.4283 YCCC   6864.888700  3 0.0001  4065 | 3/51
 71 h-m-p  0.0000 0.0002 107.5342 +YC    6864.417871  1 0.0001  4121 | 3/51
 72 h-m-p  0.0000 0.0001 201.1865 ++     6863.876035  m 0.0001  4175 | 3/51
 73 h-m-p -0.0000 -0.0000 304.3335 
h-m-p:     -2.79752541e-22     -1.39876271e-21      3.04333479e+02  6863.876035
..  | 3/51
 74 h-m-p  0.0000 0.0001 108.0226 +YYYYCCC  6863.610520  6 0.0000  4289 | 3/51
 75 h-m-p  0.0000 0.0002 282.0819 CYC    6863.372927  2 0.0000  4346 | 3/51
 76 h-m-p  0.0000 0.0002 117.3968 CYCCC  6863.041565  4 0.0001  4407 | 3/51
 77 h-m-p  0.0000 0.0003 317.6607 +CCC   6861.838449  2 0.0001  4466 | 3/51
 78 h-m-p  0.0000 0.0002 516.6967 +YCCC  6860.853170  3 0.0001  4526 | 3/51
 79 h-m-p  0.0000 0.0002 706.2897 ++     6857.221728  m 0.0002  4580 | 3/51
 80 h-m-p  0.0001 0.0003 1155.0535 +YCC   6851.293518  2 0.0002  4638 | 3/51
 81 h-m-p  0.0000 0.0001 459.4844 ++     6850.237756  m 0.0001  4692 | 4/51
 82 h-m-p  0.0001 0.0003 239.3511 YYYC   6849.886893  3 0.0001  4749 | 4/51
 83 h-m-p  0.0003 0.0017  50.2841 CC     6849.816207  1 0.0001  4805 | 4/51
 84 h-m-p  0.0002 0.0015  24.5091 CC     6849.801533  1 0.0001  4861 | 4/51
 85 h-m-p  0.0003 0.0332   6.2047 C      6849.794339  0 0.0003  4915 | 3/51
 86 h-m-p  0.0001 0.0073  20.3488 +C     6849.763993  0 0.0003  4970 | 3/51
 87 h-m-p  0.0002 0.0040  40.0485 CC     6849.728246  1 0.0002  5026 | 3/51
 88 h-m-p  0.0003 0.0036  27.6613 YC     6849.702206  1 0.0002  5081 | 3/51
 89 h-m-p  0.0003 0.0078  20.1791 C      6849.678130  0 0.0003  5135 | 3/51
 90 h-m-p  0.0003 0.0051  24.5473 YC     6849.660125  1 0.0002  5190 | 3/51
 91 h-m-p  0.0004 0.0087  11.8406 YC     6849.651561  1 0.0002  5245 | 3/51
 92 h-m-p  0.0003 0.0083  11.0970 YC     6849.646173  1 0.0002  5300 | 3/51
 93 h-m-p  0.0003 0.0148   6.7371 CC     6849.642307  1 0.0003  5356 | 3/51
 94 h-m-p  0.0004 0.0370   4.6833 CC     6849.639678  1 0.0003  5412 | 3/51
 95 h-m-p  0.0002 0.0096   5.6116 +YC    6849.632638  1 0.0007  5468 | 3/51
 96 h-m-p  0.0004 0.0065  10.8398 C      6849.625963  0 0.0004  5522 | 3/51
 97 h-m-p  0.0005 0.0097   7.5437 C      6849.620365  0 0.0005  5576 | 3/51
 98 h-m-p  0.0006 0.0029   5.3732 YC     6849.617327  1 0.0004  5631 | 3/51
 99 h-m-p  0.0005 0.0030   4.6982 C      6849.614642  0 0.0005  5685 | 3/51
100 h-m-p  0.0002 0.0010  11.7642 YC     6849.610237  1 0.0003  5740 | 3/51
101 h-m-p  0.0002 0.0009   6.5542 +CC    6849.606185  1 0.0006  5797 | 3/51
102 h-m-p  0.0000 0.0001  15.7467 ++     6849.603373  m 0.0001  5851 | 4/51
103 h-m-p  0.0001 0.0370  10.4478 YC     6849.602621  1 0.0001  5906 | 4/51
104 h-m-p  0.0011 0.1175   0.7794 C      6849.601590  0 0.0014  5960 | 4/51
105 h-m-p  0.0004 0.1245   2.5319 +YC    6849.597225  1 0.0014  6063 | 4/51
106 h-m-p  0.0004 0.0359   7.7786 CC     6849.589596  1 0.0007  6119 | 4/51
107 h-m-p  0.0028 0.1707   1.8870 YC     6849.580641  1 0.0019  6174 | 4/51
108 h-m-p  0.0004 0.0446   8.9242 +CC    6849.540114  1 0.0014  6231 | 4/51
109 h-m-p  0.0015 0.0365   8.7705 YC     6849.441827  1 0.0028  6286 | 4/51
110 h-m-p  0.0013 0.0138  19.4098 CC     6849.319506  1 0.0016  6342 | 4/51
111 h-m-p  0.0028 0.0292  10.8562 YC     6849.272723  1 0.0014  6397 | 4/51
112 h-m-p  0.0034 0.0371   4.3304 CC     6849.265463  1 0.0010  6453 | 4/51
113 h-m-p  0.0021 0.1363   2.0965 YC     6849.263706  1 0.0010  6508 | 3/51
114 h-m-p  0.0012 0.5176   1.8082 C      6849.262354  0 0.0012  6562 | 3/51
115 h-m-p  0.0002 0.0011   1.8056 +C     6849.261692  0 0.0009  6617 | 3/51
116 h-m-p  0.0013 0.3995   1.2187 CC     6849.260886  1 0.0019  6673 | 3/51
117 h-m-p  0.0051 0.4911   0.4515 C      6849.260689  0 0.0015  6727 | 3/51
118 h-m-p  0.0032 0.7576   0.2118 C      6849.260286  0 0.0038  6829 | 3/51
119 h-m-p  0.0017 0.0103   0.4811 ++     6849.254900  m 0.0103  6931 | 3/51
120 h-m-p  0.0026 0.2507   1.8926 CC     6849.243266  1 0.0039  7035 | 3/51
121 h-m-p  0.0008 0.0042   4.0297 CC     6849.235617  1 0.0013  7091 | 3/51
122 h-m-p  0.0001 0.0007   2.8944 ++     6849.232977  m 0.0007  7145 | 4/51
123 h-m-p  0.0022 0.4166   0.8854 YC     6849.232593  1 0.0011  7200 | 4/51
124 h-m-p  0.0035 0.9648   0.2772 C      6849.232553  0 0.0010  7301 | 4/51
125 h-m-p  0.0118 5.8869   0.0520 Y      6849.232488  0 0.0089  7402 | 3/51
126 h-m-p  0.0160 8.0000   0.0549 YC     6849.231205  1 0.0381  7504 | 3/51
127 h-m-p  0.0002 0.0012   3.0693 ++     6849.228747  m 0.0012  7606 | 4/51
128 h-m-p  1.6000 8.0000   0.0015 YC     6849.228592  1 0.8896  7661 | 4/51
129 h-m-p  1.6000 8.0000   0.0002 C      6849.228582  0 0.5842  7762 | 4/51
130 h-m-p  1.6000 8.0000   0.0001 Y      6849.228580  0 1.1105  7863 | 4/51
131 h-m-p  1.6000 8.0000   0.0000 Y      6849.228579  0 1.1151  7964 | 4/51
132 h-m-p  1.6000 8.0000   0.0000 C      6849.228579  0 2.2465  8065 | 3/51
133 h-m-p  0.0000 0.0000   0.0037 
h-m-p:      8.93817933e-18      4.46908966e-17      3.68617153e-03  6849.228579
..  | 4/51
134 h-m-p  0.0030 1.5069   0.0202 ---------C  6849.228579  0 0.0000  8274 | 4/51
135 h-m-p  0.0019 0.9676   0.0106 -Y     6849.228579  0 0.0001  8376 | 4/51
136 h-m-p  0.0105 5.2280   0.0059 --Y    6849.228579  0 0.0001  8479 | 4/51
137 h-m-p  0.0157 7.8565   0.0055 -----------Y  6849.228579  0 0.0000  8591 | 4/51
138 h-m-p  0.0000 0.0091   4.8143 -------C  6849.228579  0 0.0000  8699 | 4/51
139 h-m-p  0.0007 0.3340   0.1227 ---C   6849.228579  0 0.0000  8756 | 4/51
140 h-m-p  0.0160 8.0000   0.0046 ---C   6849.228579  0 0.0001  8860 | 4/51
141 h-m-p  0.0160 8.0000   0.0021 ---C   6849.228579  0 0.0001  8964 | 4/51
142 h-m-p  0.0160 8.0000   0.0016 --Y    6849.228579  0 0.0001  9067 | 4/51
143 h-m-p  0.0160 8.0000   0.0015 -------------..  | 4/51
144 h-m-p  0.0031 1.5533   0.0372 ------------ | 4/51
145 h-m-p  0.0031 1.5533   0.0372 ------------
Out..
lnL  = -6849.228579
9402 lfun, 18804 eigenQcodon, 451296 P(t)

Time used:  4:44
