Phylogenetic Tree Viewer

Interactive phylogenetic tree visualization for dormancy-related genes across species.
Upload Newick format trees or explore ortholog relationships from Comparative Hibernomics.

Upload & Visualize

Upload a phylogenetic tree in Newick format to generate an interactive visualization. Supports trees generated from MAFFT, IQ-TREE, RAxML, and FastTree.

Supported Formats

Newick (.nwk), Nexus (.nex), PhyloXML, and NHX formats with bootstrap values and branch lengths.

Layout Options

Rectangular, circular, radial and unrooted layouts. Color branches by species class or dormancy trait.

Interactive Controls

Zoom, pan, rotate, collapse clades. Search genes and export as SVG/PNG for publications.

Database Integration

Import trees from Comparative Hibernomics ortholog analysis. Nodes link to gene cards and expression data.

Drop Tree File Here

or click to browse (.nwk, .newick, .nex)

.nwk .newick .nex .treefile
Back to Comparative Hibernomics

Quick Start Pipeline

Generate a phylogenetic tree from Comparative Hibernomics ortholog data:

1

Extract Ortholog Sequences

Go to Comparative Hibernomics, search for your gene (e.g., HSP90), and download the ortholog FASTA sequences.

2

Multiple Sequence Alignment

Align sequences with MAFFT: mafft --auto orthologs.fa > aligned.fa

3

Tree Construction

Build tree with IQ-TREE: iqtree2 -s aligned.fa -m MFP -B 1000

4

Upload & Visualize

Upload the resulting .treefile here to generate the interactive phylogenetic tree.