Beta / Partial
Current online scope
This page provides read mapping, AUGUSTUS gene prediction, annotation visualization, and PLINK-based GWAS. It does not provide de novo genome assembly or a complete genome-annotation pipeline. Input limits and available references are module-specific; review each form before starting a large job.
S1
Read Mapping
Upload FASTQ reads and map against a reference genome. Get alignment statistics and coverage reports.
S2
Gene Prediction
Upload genomic DNA sequences in FASTA format. AUGUSTUS will predict gene structures and output GFF3.
S3
Genome Visualization
Upload GFF3 or BED annotation files to generate circular genome maps and feature density plots.
S4
GWAS Analysis
Upload VCF genotype data and phenotype file. Run association tests to identify significant SNPs.