RNA-seq Analysis

Upload FASTQ files, run quality control with FastQC, and perform transcript-level quantification with Salmon.

Back to All Workflows
Server Resource Notice: This analysis platform runs on limited resources (4 CPU cores, 14 GB RAM). FastQC completes in minutes; Salmon quantification may take 10-30 minutes depending on file size. Maximum upload size: 500 MB per file.
Upload FASTQ File

Click to select or drag FASTQ file here

Supported: .fastq, .fq, .fastq.gz, .fq.gz (max 500 MB)

Reference Genomes

Salmon indices must be built before quantification. Click "Build Index" to download transcriptome and build the index (takes 15-30 min, ~3-5 GB disk space).

Loading...
Job History
Loading jobs...